PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo0G0016500
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family M-type_MADS
Protein Properties Length: 192aa    MW: 20187 Da    PI: 8.925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo0G0016500genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF62.64.3e-20958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien+  r+vtfskRr+g++KK  EL++ C+ae+a +++s+ gkl+ ++
  Spipo0G0016500  9 KRIENNEARHVTFSKRRTGLFKKLGELCIHCGAEAAALVYSPGGKLHVFA 58
                    79*********************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.497161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.36E-26278IPR002100Transcription factor, MADS-box
CDDcd001202.70E-31260No hitNo description
PRINTSPR004046.7E-17323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-211057IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-172338IPR002100Transcription factor, MADS-box
PRINTSPR004046.7E-173859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MGRRKIEIKR IENNEARHVT FSKRRTGLFK KLGELCIHCG AEAAALVYSP GGKLHVFAHP  60
DEALVFDRFL DAPPASAALA PLASAGERES ALRASCAELQ AVLDAEKAGR RWWEEASLDG  120
LGAERLRRLR GSVADLRQAV AARAEMARTG PALAEAAPAS AASAGTLALP GAWPDFFGPG  180
HGGSLQLPPG F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104108.13e-32agamous-like MADS-box protein AGL61
STRINGPavir.J11717.1.p5e-29(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-21AGAMOUS-like 62