PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim12g100140.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 451aa MW: 49404 Da PI: 5.1787 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.5 | 7.7e-11 | 387 | 432 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L A +YIk+L+ Sopim12g100140.0.1 387 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 432 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.5 | 381 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-15 | 384 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.43E-11 | 385 | 436 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-14 | 386 | 442 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-12 | 387 | 437 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.2E-8 | 387 | 432 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MEEKSMDHRS HQQQQMTSGL TRYRSAPSSY FTNLLSSNNP AGVSGGSGNC GYARDDFDQL 60 LNPHASNSGI KQVFDRFVAN IGPQDSNPDG LIDDTQQNQN PMSNMDVRSE VVAPMKQEHE 120 AQMNYQCQEQ QSQNSQFVAP VKQEIAQQNS DYSLASQMNY QNHNATDFTS GMDNFGRYNR 180 LNHTKMDGGF GTGSSDSNLT RYNSSPAGFF ALVNIENEYG ALRGIGSYGA GSGTNAAGEV 240 SFSNPSRFSS QTALPSGQPT SSGLLAPISE FGAKSIEESR RGHESFGKGH KSDESYMAGF 300 ALPSWDDSQI LTDDFLQVPE DDESGSFSNV NASDNQSSEG RARPPTLLSH LSLPQTSAEL 360 SAMEKLLQDS VPCKVRAKRG CATHPRSIAE RVRRTRISER MRKLQELVPN MDKQTNTADM 420 LDFAADYIKE LETQVKALSE TRSKCTCLHE * |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC212792 | 0.0 | AC212792.2 Solanum lycopersicum DNA sequence from clone LE_HBa-224N6 on chromosome 12, complete sequence. | |||
GenBank | HG975524 | 0.0 | HG975524.1 Solanum lycopersicum chromosome ch12, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010314674.1 | 0.0 | transcription factor bHLH130-like | ||||
TrEMBL | M1C7B5 | 0.0 | M1C7B5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g100140.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 6e-57 | bHLH family protein |