PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g087970.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 570aa    MW: 60062.1 Da    PI: 7.2355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g087970.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.2e-08203247144
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                         r++W++ Ed  l+ av++ G g+W+ I +      Rt+ q+  rw
  Sopim12g087970.0.1 203 RKPWSEAEDVELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 247
                         789************************984222488888888888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.92198255IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.0E-13199250IPR009057Homeodomain-like
SuperFamilySSF466894.24E-12199253IPR009057Homeodomain-like
SMARTSM007171.2E-8202253IPR001005SANT/Myb domain
PfamPF002491.3E-6203247IPR001005SANT/Myb domain
CDDcd116601.03E-13204252No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MFEKMKKQKC FISEEDIAIL LQRYSVSTVL AILREVGQVA DEKIDWNVMV RKSTTGITNA  60
REYQMLWRHL AYRHDLIDKF DDEAQPLDDD SDLEFELEAF PAVSSEASAE AAASAKMLIA  120
SGAPNDANML NGSTIEAPLT INIPNGQTSR TGMDNSFQGT SMHGTNITVP VAVQKQPLST  180
VVAAEGLDTH GPGCTNLPPR RKRKPWSEAE DVELIAAVQK CGEGNWANIL KGDFKGDRTA  240
SQLSQRWAII RKRQGTMVGN GSQLSEAQLA ARHAMSHALN MPIGASVGPN SGGGSSNSSL  300
PVTADLASGG AQSQHQQDPL SSKPRIVPQK PAPKPTTSSD SMVKVTAVAA GARIATSSNS  360
ASQVKLAQPK TPLQIPGGGS AVKSSVLGST NGLPSNVHFI RTGLVSHSAG PPKAVHSAGP  420
SHASRPGTQQ GLSHSLKPAS PTVQPKPIGN SSKPNALAVP TAPTSTPVAE LKVNTNQEVQ  480
QDQTPPSVNS LIKVSESKEH KKEDRDPVHA NAPGVQVQEK LISLQGQEIA NNDTSDPNEV  540
PTRTESGSAN GGDPSKEPAE TENGKNKME*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1198204PRRKRKP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142000.0BT014200.1 Lycopersicon esculentum clone 133377F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004252718.10.0uncharacterized protein LOC101249442
RefseqXP_010314587.10.0uncharacterized protein LOC101249442
TrEMBLA0A3Q7JBJ60.0A0A3Q7JBJ6_SOLLC; Uncharacterized protein
STRINGSolyc12g087970.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34342237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.11e-68MYB_related family protein