PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim12g009580.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family YABBY
Protein Properties Length: 192aa    MW: 21795.6 Da    PI: 8.3868
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim12g009580.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY185.92e-57111577170
               YABBY   7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvs 97 
                          e++Cy+ CnfCn +l+vsvP + l+ +vtvrCGhCt+l svn+a a ++ + ++hl++++ +     +          + k + as+s++
  Sopim12g009580.0.1  11 FEKLCYIPCNFCNIVLVVSVPCSNLLDIVTVRCGHCTNLWSVNMAAAFHTNSWQNHLHHQVGNYTNSPHD---------QYKVDFASSSIT 92 
                         589****************************************************977665543222221.........122222222222 PP

               YABBY  98 seklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                         +     n++ e     +v+rPPekrqr Psayn+fikeeiqrika+nPdi+hreafs+aaknWahfP+i fgl
  Sopim12g009580.0.1  93 N-----NSTLE---ERNVNRPPEKRQRGPSAYNQFIKEEIQRIKANNPDITHREAFSTAAKNWAHFPHIQFGL 157
                         2.....22222...23589****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.9E-6612157IPR006780YABBY protein
SuperFamilySSF470955.11E-8102151IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.9E-4104151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSSSYIDSTN FEKLCYIPCN FCNIVLVVSV PCSNLLDIVT VRCGHCTNLW SVNMAAAFHT  60
NSWQNHLHHQ VGNYTNSPHD QYKVDFASSS ITNNSTLEER NVNRPPEKRQ RGPSAYNQFI  120
KEEIQRIKAN NPDITHREAF STAAKNWAHF PHIQFGLMLE TDNQAKLGAS ENKEKLIMHR  180
AALPKIKTFT F*
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2095889e-67AC209588.1 Solanum lycopersicum DNA sequence from clone LE_HBa-146I19 on chromosome 12, complete sequence.
GenBankHG9754519e-67HG975451.1 Solanum pennellii chromosome ch12, complete genome.
GenBankHG9755249e-67HG975524.1 Solanum lycopersicum chromosome ch12, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004251722.11e-143axial regulator YABBY 5-like isoform X1
SwissprotQ8GW461e-74YAB5_ARATH; Axial regulator YABBY 5
TrEMBLA0A3Q7J3Z51e-142A0A3Q7J3Z5_SOLLC; Uncharacterized protein
STRINGSolyc12g009580.1.11e-143(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38124163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-77YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]