PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim11g071810.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | YABBY | ||||||||
Protein Properties | Length: 178aa MW: 19906.6 Da PI: 9.6948 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 232.8 | 8.4e-72 | 10 | 171 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 sse+vCy+qCnfCntilavsvP + ++++vtvrCGhC+++lsvn+ q+l+ ++ ++l+ ++ + +++++n+k + ++++s+s+ Sopim11g071810.0.1 10 SPSSERVCYLQCNFCNTILAVSVPCSNMLTLVTVRCGHCANMLSVNIGSLIQALPLQDV--QKLQRQQYTNVENNSSNYKAYGSSSSSSSK 98 5689****************************************************996..556666677777777777777666666665 PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++ ++ + + p++ p irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl Sopim11g071810.0.1 99 FNRYSS--IVSPQIEPKI-PSIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 171 555533..3334444554.46*****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.4E-73 | 12 | 171 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.96E-8 | 116 | 164 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.0E-5 | 119 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MSFDMTFSSS PSSERVCYLQ CNFCNTILAV SVPCSNMLTL VTVRCGHCAN MLSVNIGSLI 60 QALPLQDVQK LQRQQYTNVE NNSSNYKAYG SSSSSSSKFN RYSSIVSPQI EPKIPSIRPP 120 EKRQRVPSAY NRFIKEEIQR IKASNPDISH REAFSTAAKN WAHFPHIHFG LKLEGNK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU557674 | 0.0 | EU557674.1 Solanum lycopersicum FAS protein (fasciated) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234390.1 | 1e-130 | YABBY transcription factor | ||||
Swissprot | Q9XFB0 | 7e-67 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | B2YHV8 | 1e-128 | B2YHV8_SOLLC; FAS protein | ||||
STRING | Solyc11g071810.1.1 | 1e-129 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA381 | 24 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-64 | YABBY family protein |
Publications ? help Back to Top | |||
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