PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g009290.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 452aa    MW: 50462.8 Da    PI: 6.5103
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g009290.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.31.4e-13270315454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr+++P+      +K++Ka+ L  Av YI++L
  Sopim10g009290.0.1 270 NHVEAERQRREKLNHRFYALRSVVPHV-----TKMDKASLLSDAVSYINEL 315
                         799***********************8.....8***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.9E-5428205IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.231266315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-18267330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.46E-14269320No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17270329IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.5E-11270315IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-16272321IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDELMVSSSS SSSSFFIPSL LSQTSSNLQQ KLQNILKIQT DSWSYAIFWQ TTNDDDDGHL  60
FLAWGDGHFH GTKSKTGVQS SQQSTERKNV IKGIQALICE NGDEKVDDDD DDEVTDAEWF  120
YVMSLAQSFS IGDGVPGKAF STASIIWLTG SQNLQFHTCK RAKEAHLHGI QTFVCIPTSN  180
GVIEMGSNQL IKENWVLIQQ VKSIFNNSIP HIVNCLEQNT NINPKTEELV SVSVSAECND  240
SDSDCQLLVE KKTPKKRGRK PGATRETPLN HVEAERQRRE KLNHRFYALR SVVPHVTKMD  300
KASLLSDAVS YINELKSKVA ELETQLTRKS KKLKIECTDS FSIDNNSTAT TITNSVDQIR  360
HNSFGVHSNL KVEVEVKILG PDAMVRVQSE NVNYPSTRLM RALQDLELHV HHASISSVND  420
IMLQDIVVKV PIGLSTEDRL KNALIRSIQH Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-41282069193Transcription factor MYC3
4rqw_B6e-41282069193Transcription factor MYC3
4rs9_A6e-41282069193Transcription factor MYC3
4yz6_A6e-41282069193Transcription factor MYC3
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2446980.0AC244698.7 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-63e23 map 10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004248092.10.0transcription factor MYC3-like
TrEMBLA0A3Q7IBQ90.0A0A3Q7IBQ9_SOLLC; Uncharacterized protein
STRINGSolyc10g009290.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.14e-78bHLH family protein