PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim09g075640.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 758aa MW: 86821 Da PI: 7.0284 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 63.9 | 4.7e-20 | 59 | 152 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 +fY++++k++GFs+r+++++ + + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+ +w++t +++ HnH Sopim09g075640.0.1 59 EFYCSFGKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSDDGKLQRNRKSSRCGCQAFMRIVKRAdhnVPEWRITGFSNVHNH 149 6***************999887455667********************9*******************99888555568************ PP FAR1 88 ela 90 el Sopim09g075640.0.1 150 ELL 152 *96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.8E-17 | 59 | 152 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-21 | 275 | 366 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.175 | 551 | 587 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.7E-8 | 559 | 585 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.5E-6 | 562 | 589 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 758 aa Download sequence Send to blast |
MPEITNIAKE TSENGTDSSQ DDTGTVEEMP EDTILQRQTS VNLIPFIGQR FVSQDAAYEF 60 YCSFGKQCGF SIRRHRTRGK DGVGRGITRR DFTCHRGGYP QLKPSDDGKL QRNRKSSRCG 120 CQAFMRIVKR ADHNVPEWRI TGFSNVHNHE LLKSTEMQLI PAYCTMSPDD KSRICMFVKA 180 GMSVRQMLRL MELEKGVKLG CLPFTEVDVR HFLQSFRNVD QDNDPIDLLK MCKEMKDKDL 240 KFKYDYKIDC NNRLEHIAWS YASSMRLYEY FGDAIVFDTT HRLDAYDMLL GIWIGVDNHG 300 SHCFFGCILL RDENMRSFSW ALKTFLGFMN GKTPATMLTD QNLWLKEAIA TEMPRVKHAF 360 CIWNITSRFS EWFSTLLGSQ YDNWKAEFHR LYNLHSIEEY EVGWNEMIET YQLDGNKHIA 420 SLYALRSYWA LPFLRSFFFA GMTSTFQSET INTFIQRFLS AQSILGNFVE QVVRVVDAKD 480 QAGAKHKVQR IVQKVPLKTG SPIESHAANV LTPFAFSKLQ EELVFAPQYA SLMVDESYFV 540 VRHHKEMGRG YKVLWIPHDE FISCSCHNFE FTGILCRHVL RVLSTNNCFH IPDRYLPMRW 600 REFTSSVAKP TLLSLPSDHL GKVQLLQSMI STLINESVET EERLNVVCDE VSTVLSRIKG 660 LPTASNSGNA IAYESPSNSL ILAEVEDSEG IGQSFTCSPH ECINLAKLKE RGSRDGLDFY 720 GKRRRFSIPC CGQYGHDAND CPMMEGEDLN GDRLGFL* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975521 | 0.0 | HG975521.1 Solanum lycopersicum chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004247382.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_010326560.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Refseq | XP_025888546.1 | 0.0 | protein FAR1-RELATED SEQUENCE 11-like | ||||
Swissprot | Q9SY66 | 0.0 | FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11 | ||||
TrEMBL | A0A3Q7I771 | 0.0 | A0A3Q7I771_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g075640.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13535 | 14 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G10240.1 | 0.0 | FAR1-related sequence 11 |
Publications ? help Back to Top | |||
---|---|---|---|
|