PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim09g011120.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 277aa    MW: 31666.2 Da    PI: 7.9442
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim09g011120.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000145274123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C+ C + F++   L  H+++H
  Sopim09g011120.0.1 52 YTCSFCRREFRSAQALGGHMNVH 74
                        9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.09E-64979No hitNo description
SMARTSM003550.00615274IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.2195279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEQTRYWMST KRKHDMTLSN NPSSYGDSWE EQAFAEDAAG ALGGCIWPPR SYTCSFCRRE  60
FRSAQALGGH MNVHRRDRAR MKQSPPSNSP SVHDHQVFIP PTPPLHSNHH HNSHVQYPSQ  120
ICNTFMYNPN SDSASGVPIR VSSQKTLETH HHSSLSSIVH EEKKNSLSSS WSNLVADKYS  180
CLSSVKNDEE KKMKSIDFKK DQERNLEVMI DSSFRAKHDH IVEPNYKRRK VDQEDNISFA  240
NLFPRTSSSI ERCRPQSEAL ERIPSAIEEL DLELKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134774229superman protein
2l1o_A2e-134774229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755210.0HG975521.1 Solanum lycopersicum chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019071045.10.0zinc finger protein 10
SwissprotO809422e-26ZFP10_ARATH; Zinc finger protein 10
TrEMBLA0A3Q7I0170.0A0A3Q7I017_SOLLC; Uncharacterized protein
STRINGSolyc09g011120.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90452026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.12e-27zinc-finger protein 10