PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim08g006270.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 196aa    MW: 22405.8 Da    PI: 8.8547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim08g006270.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.6e-1850134593
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         +++++  ++g l+lpk+f  ++g+++++   l+++de+ rsW+++l y+ +s  ++l+ GW+eF+ an+LkegD ++F+++  +++++ 
  Sopim08g006270.0.1  50 FLRPYCISKGYLRLPKQFSMANGLINKK-CGLIIRDERERSWNLRL-YTHNSIVHILG-GWSEFCVANDLKEGDYMMFEVVV-NGEKPI 134
                         567899999**********9**777544.47999************.89999999999.********************765.444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1844137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1945137IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.87246140IPR003340B3 DNA binding domain
SMARTSM010199.8E-1747141IPR003340B3 DNA binding domain
PfamPF023622.5E-1650137IPR003340B3 DNA binding domain
CDDcd100171.10E-1550125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MFEVVTNGKQ PVWKIHHLTN PSTVEEPSEN SVFKETAPHN PIGQSHFECF LRPYCISKGY  60
LRLPKQFSMA NGLINKKCGL IIRDERERSW NLRLYTHNSI VHILGGWSEF CVANDLKEGD  120
YMMFEVVVNG EKPIWKFHNK PTPSIKSSRN VEAANHKPAD HSRFVCTIKP YCLTYGYLCL  180
PKQFVDGISS VRHIA*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092831e-127AP009283.1 Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence.
GenBankHG9754471e-127HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-127HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070916.11e-134B3 domain-containing protein REM17 isoform X4
TrEMBLA0A3Q7HH761e-127A0A3Q7HH76_SOLLC; Uncharacterized protein
STRINGSolyc08g006270.1.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.11e-17B3 family protein