PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim07g008180.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 181aa MW: 20341.2 Da PI: 8.4989

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim07g008180.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	218.9	1.5e-67	6	163	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 + +s+q+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q ++ s ++++ + + e +++ + ++ ++++ s + Sopim07g008180.0.1 6 DVASDQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSSASWQNHQVPNYTAPEYRMDFGSSTKCNMNRMSMR- 95 5689*****************************************9999998888875555555555555554443333333333222. PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++v + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Sopim07g008180.0.1 96 --------TPITNNVHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163 ........23333333344589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-71	8	163	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	108	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	111	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MASCIDVASD QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSSS 60 SASWQNHQVP NYTAPEYRMD FGSSTKCNMN RMSMRTPITN NVHEERIVNR PPEKRQRVPS 120 AYNQFIKEEI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNNQ AKLACGSRKL 180 *

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667744	0.0	KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001353827.1	1e-134	axial regulator YABBY5a isoform 2
Swissprot	Q8GW46	4e-87	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A068FJR2	1e-127	A0A068FJR2_9SOLN; YAB5 protein
STRING	Solyc07g008180.2.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-84	YABBY family protein

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]