PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim06g068460.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 361aa MW: 39744.3 Da PI: 8.2726 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.5 | 3.7e-30 | 168 | 227 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y+rC++a gCpvkkkv+rs ed+++v+ tYegeHnh+ Sopim06g068460.0.1 168 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApGCPVKKKVQRSIEDQSIVVATYEGEHNHP 227 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-29 | 160 | 228 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.418 | 163 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-26 | 165 | 228 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.5E-36 | 168 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-25 | 169 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MEFTSLVDTS LDLSFRPRQK VLKQEVQSDF TGLSIERENM VVKNEAGDLL EELNRVSSEN 60 KKLTEMLTVV CENYNALRNQ MMEYMSTQNG VAEDTSAGSR KRKAESISNP VNNNNNNNNN 120 MDVVHGRSSE SSSSDEESCC KKLREEHIKA KVTIVSMKTD ASDTSLIVKD GYQWRKYGQK 180 VTRDNPCPRA YFRCSFAPGC PVKKKVQRSI EDQSIVVATY EGEHNHPQTS KPESGPSTNT 240 STASRLNVTT IAGTTTSVPC STTLNSSGPT ITLDLTAPKT VEKRDMKMNH STTSPTSGNS 300 IRTTTTTSAA GGEYQNRPEF QQFLIEQMAT SLTKDPSFKA ALAAAISGKI LQHNNQTGRW 360 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-20 | 167 | 226 | 13 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ654265 | 0.0 | FJ654265.1 Solanum lycopersicum WRKY transcription factor 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001234301.2 | 0.0 | WRKY transcription factor 40 | ||||
TrEMBL | A0A3Q7H007 | 0.0 | A0A3Q7H007_SOLLC; Uncharacterized protein | ||||
STRING | Solyc06g068460.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2855 | 24 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 5e-87 | WRKY DNA-binding protein 40 |