PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim05g006650.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 273aa    MW: 29727.9 Da    PI: 6.3725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim05g006650.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10156203455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Sopim05g006650.0.1 156 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKALVLDEIINYIQSLQ 203
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.60E-10150207No hitNo description
SuperFamilySSF474591.31E-17150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.593152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18152223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-8156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDPQASMMNH AGGFQSPPFN LSEIWQFPIN AGEGETPYSF PLSTAAAPQN VSDDVRNNDP  60
MVLDRRTNNY SGGGGGGAAR KRNEDDESAK GVSTSGNGLT ESASKRMKVT RSNENCEARG  120
DGEGNSVKSA EQPAKPAEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKVLQDIVP  180
GCNKVIGKAL VLDEIINYIQ SLQHQVEFLS MKLEAVNSKM PSIEGYPSKD FGQQPFDTNA  240
MAFSSQATRE YTRGTSPDWL HMQLGGGFER TT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139790.0BT013979.1 Lycopersicon esculentum clone 133024F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238742.10.0transcription factor BHLH094
SwissprotQ69WS32e-77BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A3Q7H5D00.0A0A3Q7H5D0_SOLLC; Uncharacterized protein
STRINGSolyc05g006650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-90BIG PETAL P