PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim04g074320.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

C2H2

Protein Properties

Length: 274aa MW: 31122.8 Da PI: 8.6659

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim04g074320.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	114	133	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C++C+k+F+r nL+ H+ Sopim04g074320.0.1 114 FSCHICHKTFNRYNNLQMHM 133 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.85E-5	109	136	No hit	No description
SMART	SM00355	0.55	114	136	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.388	114	141	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.3E-4	114	133	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	116	136	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	161	193	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	150	198	218	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009813	Biological Process	flavonoid biosynthetic process
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MEHSYFASSS RSIENQIEPF DFFADKTQNA FEFLSLSQPS NQNIEKMSNY EENPNWNNIE 60 DDVTVALHIG LPNSSNNNNN IPIDHNKSDG NIIGATTQYW IPTPSQILVG FTHFSCHICH 120 KTFNRYNNLQ MHMWGHGSQY RKGPESLKGT QPRAMLGIPC YCCEEGCKNN INHSRAKPLK 180 DFRTLQTHYK RKHGTKRFAC RKCGKCLAVK GDWRTHEKNC GKRWLCVCGS DFKHKRSLKD 240 HIASFGEGHG ASSPANNNSF DGVEVQRSAN FYV*

Functional Description ? help Back to Top
Source	Description
UniProt	May act as a transcriptional regulator involved in the differentiation of young endothelium. Altered differentiation results in incompetence for pigments synthesis and the lack of condensed tannins in the seed coat (PubMed:21477081). Plays a role in the regulatory network controlling flavonoid accumulation in endothelium cells during seed development (PubMed:21477081). {ECO:0000269\|PubMed:11782451, ECO:0000269\|PubMed:21477081}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975516	0.0	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004238530.2	0.0	protein TRANSPARENT TESTA 1
Swissprot	Q8VWG3	1e-102	TT1_ARATH; Protein TRANSPARENT TESTA 1
TrEMBL	A0A1U8GRW7	1e-173	A0A1U8GRW7_CAPAN; protein TRANSPARENT TESTA 1-like
TrEMBL	A0A2G3CNX8	1e-173	A0A2G3CNX8_CAPCH; Protein TRANSPARENT TESTA 1
STRING	Solyc04g074320.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA13264	15	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34790.1	1e-102	C2H2 family protein

Publications ? help Back to Top
Lian J, et al. Silencing of BnTT1 family genes affects seed flavonoid biosynthesis and alters seed fatty acid composition in Brassica napus. Plant Sci., 2017. 254: p. 32-47 [PMID:27964783]