PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopim04g071360.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 655aa MW: 71936.2 Da PI: 6.5246 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.1 | 2.7e-29 | 60 | 144 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r+em+ +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++ + +++++f+qlea Sopim04g071360.0.1 60 RWPRQETIALLKIRSEMDVIFRDSSLKGPLWEEVSRKMADLGFHRSSKKCKEKFENVYKYHKRTKDGRASK--ADGKNYRFFEQLEA 144 8********************************************************************95..67778*******85 PP | |||||||
2 | trihelix | 103.7 | 1.3e-32 | 461 | 546 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Sopim04g071360.0.1 461 RWPKAEVEALIKLRTNLDVKYQENGPKGPLWEEISSGMKKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 546 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.027 | 53 | 117 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.4E-4 | 57 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.64E-25 | 59 | 124 | No hit | No description |
Pfam | PF13837 | 8.9E-19 | 59 | 145 | No hit | No description |
PROSITE profile | PS50090 | 7.457 | 454 | 518 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.6E-4 | 458 | 520 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 460 | 517 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 3.32E-28 | 460 | 525 | No hit | No description |
Pfam | PF13837 | 2.3E-22 | 460 | 547 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 655 aa Download sequence Send to blast |
MLGVSGLVSS EGGGDNPESG GGAGSGGSSE IGLGGGSGGG GGSSGGFMTE DGERNSGGNR 60 WPRQETIALL KIRSEMDVIF RDSSLKGPLW EEVSRKMADL GFHRSSKKCK EKFENVYKYH 120 KRTKDGRASK ADGKNYRFFE QLEALENITS HHSLMPVPSS NTRPPPPPLE ATPINMAMPM 180 ASSNVQVTAS QGTIPHHVTI SSAPPPPNSL FAPSHQNAPS SSPVPLPPPP SQQPSPQPAV 240 NPINNIPQQV NASAMSYSTS SSTSSDEDIQ RRHKKKRKWK DYFEKFTKDV INKQEESHRR 300 FLEKLEKREH DRMVREEAWK VEEMARMNRE HDLLVQERAM AAAKDAAVIS FLQKITEQQN 360 IQIPNSINVG PPSAQVQIQL PENPLSAPVP TQIQPTTVTA AAPPQPAPVP VSLPVTIPAP 420 VPALIPSLSL PLTPPVPSKN MELVPKSDNG GDSYSPASSS RWPKAEVEAL IKLRTNLDVK 480 YQENGPKGPL WEEISSGMKK IGYNRNAKRC KEKWENINKY FKKVKESNKK RPEDSKTCPY 540 FHQLDALYKE KAKNPETASS TSSFNPSFAL NPDNNQMAPI MARPEQQWPL PQHHESTTRI 600 DHENESDNMD EDDHDDEEDE DDEDENNAYE IVANKQQSSM AAANTTTSTA TTTV* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 269 | 276 | QRRHKKKR |
2 | 269 | 277 | QRRHKKKRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975516 | 0.0 | HG975516.1 Solanum lycopersicum chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004237789.1 | 0.0 | trihelix transcription factor GT-2 | ||||
TrEMBL | A0A3Q7G7I2 | 0.0 | A0A3Q7G7I2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g071360.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 2e-79 | Trihelix family protein |