PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim03g115450.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 446aa    MW: 49632.6 Da    PI: 8.3354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim03g115450.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011100119221
                         EETTTTEEESSHHHHHHHHH CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                         +C+ CgksF ++  L  H++
  Sopim03g115450.0.1 100 VCKECGKSFQSWKALFGHMK 119
                         6******************7 PP
2zf-C2H2110.0014354376123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         ++Cp+C k F++   L  H r+H
  Sopim03g115450.0.1 354 HECPICYKIFPSGQALGGHKRSH 376
                         79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.681234IPR015880Zinc finger, C2H2-like
SuperFamilySSF576679.16E-101234No hitNo description
PfamPF139121.0E-41235IPR007087Zinc finger, C2H2
PROSITE profilePS501579.4521239IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576679.16E-1094121No hitNo description
SMARTSM003550.007899121IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76299126IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.4E-4100122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139123.1E-8101123IPR007087Zinc finger, C2H2
SuperFamilySSF576672.97E-7290312No hitNo description
SMARTSM003550.063290312IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.053290317IPR007087Zinc finger, C2H2
PfamPF139121.2E-11290313IPR007087Zinc finger, C2H2
PROSITE patternPS000280292312IPR007087Zinc finger, C2H2
SuperFamilySSF576672.97E-7349376No hitNo description
SMARTSM003550.22354376IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.891354376IPR007087Zinc finger, C2H2
PfamPF139125.8E-12354377IPR007087Zinc finger, C2H2
PROSITE patternPS000280356376IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MGYEDHEVLM KHVCKFCNKS FHCGRSLGGH MRSHMVNTTD GETSRKKLPA YIVSNSTTNN  60
SNRDVNLDMG NQDISYVLRN NPKKTSKFSQ DLVDTLLPKV CKECGKSFQS WKALFGHMKC  120
HSSSSSVEED SWNSVSESDT EAAAAAAAAA AAATNKKKRS SRKRYNMAPA ATSSSLTVAA  180
NGSSPCVSEI EHEQEEIAMS LIMLSRDVSN WVGNNHVTDQ CSDNNSQFLT KSELIKKVKN  240
GKKTEQGESS KSVTNGQKRN RTEVLDDEKK KKMKMENENR VVISDPKIKF ECTTCNKSFH  300
SYQALGGHRA SHKNSKGDQT CAATHIDLAK QIKTGDNETE FGQNCGSKKQ LKMHECPICY  360
KIFPSGQALG GHKRSHLIAE AKKNNHNQTV EVEKPTPEIK NFLDLNLPAP VEEEDSTHEQ  420
QHIEFQQWWI DSTHKHEQLL GLLSN*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2385680.0AC238568.1 Solanum lycopersicum chromosome 3 clone C03HBa0071P11, complete sequence.
GenBankHG9755150.0HG975515.1 Solanum lycopersicum chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004236489.10.0zinc finger protein ZAT9-like
TrEMBLA0A3Q7FT170.0A0A3Q7FT17_SOLLC; Uncharacterized protein
STRINGSolyc03g115450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-28C2H2-like zinc finger protein