PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim03g115120.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 373aa MW: 43463.8 Da PI: 6.2236 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.8 | 0.00077 | 339 | 359 | 2 | 22 |
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + ++H ++ Sopim03g115120.0.1 339 YCVVCGKKFKSEKQWRNHEQS 359 5*****************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.287.110 | 1.1E-20 | 42 | 120 | IPR001623 | DnaJ domain |
SuperFamily | SSF46565 | 1.31E-21 | 43 | 132 | IPR001623 | DnaJ domain |
SMART | SM00271 | 1.0E-15 | 46 | 108 | IPR001623 | DnaJ domain |
CDD | cd06257 | 1.42E-15 | 47 | 105 | IPR001623 | DnaJ domain |
PROSITE profile | PS50076 | 17.391 | 47 | 116 | IPR001623 | DnaJ domain |
Pfam | PF00226 | 5.1E-18 | 48 | 113 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 6.6E-12 | 49 | 67 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 6.6E-12 | 67 | 82 | IPR001623 | DnaJ domain |
PRINTS | PR00625 | 6.6E-12 | 88 | 108 | IPR001623 | DnaJ domain |
PROSITE pattern | PS00636 | 0 | 93 | 112 | IPR018253 | DnaJ domain, conserved site |
SuperFamily | SSF57667 | 6.35E-13 | 325 | 368 | No hit | No description |
SMART | SM00451 | 1.6E-5 | 335 | 369 | IPR003604 | Zinc finger, U1-type |
PROSITE profile | PS50157 | 8.767 | 338 | 367 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF12171 | 1.2E-10 | 338 | 363 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 340 | 362 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MFWSWLLESV LKKVPLPFAA KQPLTDQPKP TSLSFPGITA LSSEKRCFYE VLGVNCDCTP 60 NEIRSAFRKL ALQRHPDKLV RSGVPEFEAT AIFQELVNAY DVLSDAQERA SYDSQRSAYQ 120 ILFSNSDPKN SSNYSGSVPD LSSFFSNSVY SGYSDERKGF YKVYGDLFEK IYHRELNLAR 180 KLGTNLPEEA PIMGNMQSPY AQVTAFYNYW LGFATVNDFC QSDVYKSTLA SDRNSRRMME 240 DINKKLRKKA KRDYNVTVRG LAEFVRRRDR RVIEMQMKRN EELEKKNEEG RKRMEELERE 300 KAERARNYVE PEWTRTEELQ DGGIEEEESE EEDEEEELYC VVCGKKFKSE KQWRNHEQSK 360 KHKENEKMAA LT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 251 | KKLRKKAKR |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU124739 | 0.0 | EU124739.1 Solanum lycopersicum chromosome 3 clone C03HBa0233O20, complete sequence. | |||
GenBank | HG975515 | 0.0 | HG975515.1 Solanum lycopersicum chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004236500.1 | 0.0 | DNAJ protein JJJ1 homolog | ||||
Swissprot | Q9C911 | 1e-122 | JJJ1_ARATH; DNAJ protein JJJ1 homolog | ||||
TrEMBL | A0A3Q7GGK6 | 0.0 | A0A3Q7GGK6_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g115120.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6110 | 15 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74250.1 | 1e-111 | DNAJ heat shock N-terminal domain-containing protein |