PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopim02g087570.0.1

Organism

Solanum pimpinellifolium

Taxonomic ID

4084

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 124aa MW: 14475.6 Da PI: 9.0346

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopim02g087570.0.1	genome	CSHL	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	130.4	7.5e-41	5	105	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleql 90 +CaaCk++rrkC++dCvlapyfpa+qpkkf+n+h+lFG++n++k+l++l++e+ ++dam+s+++e+++ra+ PvyG+v+ i+ l+qql+ + Sopim02g087570.0.1 5 SCAACKYQRRKCTSDCVLAPYFPANQPKKFQNAHRLFGVRNIVKILQELKDEDqKSDAMKSIIFESDMRAKFPVYGCVECISYLRQQLQIS 95 6**********************************************666549******************************** PP DUF260 91 kaelallkee 100 +el+ ++++ Sopim02g087570.0.1 96 LQELQDVRSQ 105 **999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.877	4	106	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	8.2E-39	5	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MSRVSCAACK YQRRKCTSDC VLAPYFPANQ PKKFQNAHRL FGVRNIVKIL QELKDEDQKS 60 DAMKSIIFES DMRAKFPVYG CVECISYLRQ QLQISLQELQ DVRSQLEFYR QQHPTATYPN 120 FDR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-30	2	109	8	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-30	2	109	8	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975514	0.0	HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015163531.1	1e-83	PREDICTED: LOB domain-containing protein 27
Swissprot	Q9STS6	5e-38	LBD27_ARATH; LOB domain-containing protein 27
TrEMBL	A0A3Q7FWE7	2e-86	A0A3Q7FWE7_SOLLC; Uncharacterized protein
STRING	Solyc02g087570.1.1	4e-87	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1449	23	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-40	LOB domain-containing protein 27

Publications ? help Back to Top
Kim MJ,Kim M,Kim J Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis. Plant Signal Behav, 2015. 10(8): p. e1044193 [PMID:26252070] Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]