PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g102260.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family M-type_MADS
Protein Properties Length: 250aa    MW: 27882.8 Da    PI: 9.6566
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g102260.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.34.1e-181051243
                        ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+ 
  Sopim01g102260.0.1 10 FITNDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSPY 51
                        89**************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.5E-25160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006616.904149IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.03E-23185IPR002100Transcription factor, MADS-box
CDDcd002663.49E-21285No hitNo description
PRINTSPR004042.8E-9323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-191051IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MTRKKVKLAF ITNDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDTSPEVWPN  60
TMGAQRVLAE FKRMPEMEQS KKMVNQESFI RQRIAKASEQ LKKQSKENRE KEMTEVMYQG  120
LTGKGLQNLN LGDLNDLGWV IDQNLKEVYK RIEAVKKGAS TSSSSSVAAA AVAAAAVASQ  180
AVAPPMEQKP AVVELGLDSM QRTQTEWFTD WMNSNASDQH IGYGHADEMI LPNFNDNHNA  240
NVWPNNFYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFITNDSARKATFKKRK
22125KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004230363.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK32e-68AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLA0A3Q7EP460.0A0A3Q7EP46_SOLLC; Uncharacterized protein
STRINGSolyc01g102260.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15322367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.15e-58AGAMOUS-like 80
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]