PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim01g095880.0.1
Organism
Solanum pimpinellifolium
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 180aa    MW: 20749.8 Da    PI: 9.6116
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim01g095880.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.42.3e-1270161886
                         -HHHHT.T-EE--HHH.HTT............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   8 sdvlks.grlvlpkkfaeeh............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         sd+++s +r+ +p ++a++             +++  ++++++++d++g   ++k++ +k+ +r v+ +GW++ v+ n+L  gD + + + 
  Sopim01g095880.0.1  70 SDTNSSlSRFLIPAECATNLlqhmteserekiQSDDDKGIDISVMDPKGDLHNMKFTEWKSLKRLVFNRGWNKLVENNQLHKGDLLSLWHY 160
                         555554599******9966699999888877755555999*********999999988**************************9988755 PP

                         S CS
                  B3  86 g 86 
                         +
  Sopim01g095880.0.1 161 R 161
                         4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.2E-1757166IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-1661163IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.83964177IPR003340B3 DNA binding domain
CDDcd100173.15E-1265175No hitNo description
PfamPF023621.3E-973159IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MTTIRLFGNN ITVLRLFGVQ FSPLNNNNVQ QRDDRVMNMP DLLPPSLRLN IESVRGSEPV  60
HMGRKYLENS DTNSSLSRFL IPAECATNLL QHMTESEREK IQSDDDKGID ISVMDPKGDL  120
HNMKFTEWKS LKRLVFNRGW NKLVENNQLH KGDLLSLWHY RSFNNKPCFA VNIIPKPKQ*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2402260.0AC240226.1 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone sle-73o18 map 1, complete sequence.
GenBankHG9755130.0HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015081580.21e-118putative B3 domain-containing protein At5g35780
TrEMBLA0A3Q7EMI51e-129A0A3Q7EMI5_SOLLC; Uncharacterized protein
STRINGSolyc01g095880.1.11e-130(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA116791115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-10B3 family protein