PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopim01g057270.0.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | CAMTA | ||||||||
Protein Properties | Length: 958aa MW: 107785 Da PI: 8.893 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 153.4 | 4.9e-48 | 15 | 132 | 2 | 118 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseen 91 lke ++rwl ++e+++iL n++++ lt++l+ +p+ gs++Ly+rk + +f kDG++w+k kdg+t++E+hek K g+v+vl+cyY+h+e n Sopim01g057270.0.1 15 LKElHHRWLLPHEVCQILRNHQSFCLTQQLQLKPPAGSIFLYDRKLLPNFCKDGHHWRKNKDGQTIKEAHEKFKAGSVDVLHCYYVHGEGN 105 56669************************************************************************************** PP CG-1 92 ptfqrrcywlLeeelekivlvhylevk 118 ++fqrr+yw+Lee+le+ivlvhy++vk Sopim01g057270.0.1 106 KNFQRRSYWMLEEQLEHIVLVHYRDVK 132 ************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 67.114 | 11 | 137 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.5E-61 | 14 | 132 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.3E-45 | 18 | 131 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 6.1E-7 | 400 | 488 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 4.2E-14 | 402 | 487 | IPR014756 | Immunoglobulin E-set |
Pfam | PF01833 | 5.1E-4 | 404 | 486 | IPR002909 | IPT domain |
SuperFamily | SSF48403 | 6.22E-16 | 588 | 695 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 5.3E-15 | 591 | 696 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.08E-13 | 594 | 692 | No hit | No description |
PROSITE profile | PS50297 | 15.618 | 600 | 694 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 9.5E-7 | 617 | 695 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0029 | 633 | 665 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.526 | 633 | 665 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 1500 | 672 | 702 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 110 | 753 | 775 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 9.03E-5 | 782 | 860 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 55 | 807 | 829 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.12 | 809 | 828 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.11 | 830 | 852 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.231 | 832 | 859 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.14 | 835 | 852 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 958 aa Download sequence Send to blast |
MYLLMESKVD LEQILKELHH RWLLPHEVCQ ILRNHQSFCL TQQLQLKPPA GSIFLYDRKL 60 LPNFCKDGHH WRKNKDGQTI KEAHEKFKAG SVDVLHCYYV HGEGNKNFQR RSYWMLEEQL 120 EHIVLVHYRD VKEVFPQQFN DMVVAGYRLG ASRLQPVHPG LLLENPDSSS KPCFVFGPAF 180 QKSHTSNPSL VDLKEQALSS ELHSGDSKGL VAFSRSKERF QLNPQVRAFM SSGFRKFERN 240 LNVMLQRKFY SGHYNLADLR SSKLTYAKLY AGKAVANNRS RLAITSGKVF EENIHVAPPQ 300 IQNISSSQTV VTPDAAVKTS SLDGGLNSDE VGSLKKLDIL GKWMDREFAG GNKSLMSSDS 360 GNYWNTLDTD NGDKEVSTLS RHLLLEANSV GTSPSQKQLF RIFDFSPQWA FSGVETKVLI 420 VGTFLVHRKY LTCLKWSCMF GEVEVSAEVQ TQSIRCQVPF HAPGHVPFYV TCGNRLACSE 480 VREFEYREKS SELALALRPS DEVHLQVQLV KLLYSGLNKK FLDCSSRECE NCKLKTQLCS 540 LKCQTGNATE RLEDLLAVIE CDHINFKDVQ IQNFMKDKLY EWLVSRAHEE DKGPNILNDQ 600 GKGVIHLVAA LGYEWGLLPL IAAGISPNFR DACGRTALHW AAHYGREDMV IALIKLGVAA 660 GAVDDPTTAS PGGRTAADLA SSRGYKGIAG YLAESDLTSH HQLLATSKNA LDTIGAGLEA 720 EKVYESAVQE IVPLNGTIDD DVSLKASLAS LRKSAHAAAL IQAAFRARSF RQRQLRESRN 780 DVSEASLDLV ALGSLNKVQK VNCFEDYLHS AAINIQQKYC GWKGRREFLK VHNQIVKMQA 840 LVRGHEVRKQ YKKFVWAVSI LEKGILRWRR KKTGLRGFWP EKTSETGIVE REKEEEYDYL 900 SIGLKQKCAG VEKALGRVES MVRHPEARDQ YMRMVAKFKS CKLDDGGREV NRSSPPV* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN566050 | 0.0 | JN566050.1 Solanum lycopersicum calmodulin-binding transcription factor SR4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010318684.1 | 0.0 | calmodulin-binding transcription factor SR4 isoform X1 | ||||
TrEMBL | H8ZRY5 | 0.0 | H8ZRY5_SOLLC; Calmodulin-binding transcription factor SR4 | ||||
STRING | Solyc01g057270.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13716 | 10 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.1 | 1e-171 | ethylene induced calmodulin binding protein |