PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen11g023410.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 441aa MW: 48615.9 Da PI: 6.8431 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.9 | 6.7e-12 | 378 | 423 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L Av+YIk+L+ Sopen11g023410.1 378 SIAERVRRTRISDRMRKLQELVPNM----DKQTNTADMLDFAVDYIKELE 423 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.85 | 372 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.88E-15 | 375 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.14E-11 | 376 | 427 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.5E-14 | 377 | 433 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.2E-9 | 378 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.5E-12 | 378 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 441 aa Download sequence Send to blast |
MDHSRVEQQP ITSGLTRYRS APSSYFSTLL TTTTPVTGGG CGYARDDFSN LPNSTASSSS 60 TDIEQVFARF VASIGNSNSN SGNFPTNQPI HENPTSNMNV RSDFVVPKQE ITPRLVRHRS 120 SDYSLVSNYQ NQNQHFISPV KKEPETLLQS TDHVSASQLN YQSQPQQIEK LNAVTDKPFV 180 FANSASLTPG SSSGGGGNSN LTRYNSSPAG FFAQINIENE YGAIRGIGSY ETGTNAAAET 240 SLSTPKSFKT QVGFSSGKPP ASPRLMAPIS EFGTKVLEEK STGNEHKNDE HCITDFPMPS 300 WEDSHILSDD FLKTEDIEIE PISNEDASHN QSSEGLARPP IPLSHHLSLP TSTMEKLLQD 360 SVHLNVRAKR GCATHPRSIA ERVRRTRISD RMRKLQELVP NMDKQTNTAD MLDFAVDYIK 420 ELEKQVKILA ERRAKCTCIN K |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 0.0 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015056693.1 | 0.0 | transcription factor bHLH81-like | ||||
TrEMBL | A0A3Q7JMX0 | 0.0 | A0A3Q7JMX0_SOLLC; Uncharacterized protein | ||||
STRING | Solyc11g056650.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 2e-48 | bHLH family protein |