PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen11g020170.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bZIP

Protein Properties

Length: 365aa MW: 40038.9 Da PI: 8.8764

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen11g020170.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.5e-11	287	342	5	59
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke.leelkkevakl 59 +r +r++kNRe+A rsR RK+a++ eLe +v++L++ ++L+k+ +e ++k+ +l Sopen11g020170.1 287 RRRKRMIKNRESAARSRDRKQAYTLELEAEVAKLKEIKQELQKKqAEFIEKQKNQL 342 689************************************99765145555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-12	283	348	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	5.5E-12	284	342	No hit	No description
PROSITE profile	PS50217	10.151	285	330	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.2E-9	287	345	IPR004827	Basic-leucine zipper domain
CDD	cd14707	1.13E-22	287	341	No hit	No description
SuperFamily	SSF57959	5.42E-9	287	335	No hit	No description
PROSITE pattern	PS00036	0	290	305	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MGSYLNFKNF ADTSQPESSG NNSNFFLARQ SSIYSFTFDE LQSTCGLGKD FGSMNMDDLL 60 KNIEESQALS SSAALGGNLQ RQGSLTLPRT LSQKTVDEVW RDFQKESVVA NDASGTGGSN 120 FGQRESTLGE MTLEEFLVRA GAVQEDMQPA GYSNDVTFAS GFTQPSSSVT IAFQQATQNP 180 GHQIAGNNIF NVVSTTTSSP QQPLFPKQTT VEFASPMQLG SPGKRLPMSN PSANTSSVMQ 240 GGVMTMPVKG VSPGNLDTSS LSPSPYACGE GGRGRRSCTS FEKVVERRRK RMIKNRESAA 300 RSRDRKQAYT LELEAEVAKL KEIKQELQKK QAEFIEKQKN QLLEKMNVPW ENKLICLRRT 360 VTGPW

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MGSYLNFKNF ADTSQPESSG NNSNFFLARQ SSIYSFTFDE LQSTCGLGKD FGSMNMDDLL  60
KNIEESQALS SSAALGGNLQ RQGSLTLPRT LSQKTVDEVW RDFQKESVVA NDASGTGGSN  120
FGQRESTLGE MTLEEFLVRA GAVQEDMQPA GYSNDVTFAS GFTQPSSSVT IAFQQATQNP  180
GHQIAGNNIF NVVSTTTSSP QQPLFPKQTT VEFASPMQLG SPGKRLPMSN PSANTSSVMQ  240
GGVMTMPVKG VSPGNLDTSS LSPSPYACGE GGRGRRSCTS FEKVVERRRK RMIKNRESAA  300
RSRDRKQAYT LELEAEVAKL KEIKQELQKK QAEFIEKQKN QLLEKMNVPW ENKLICLRRT  360
VTGPW

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the ABA-responsive element (ABRE). Mediates stress-responsive ABA signaling. {ECO:0000269\|PubMed:11884679, ECO:0000269\|PubMed:15361142}.
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA). {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:16284313}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB675692	0.0	AB675692.1 Solanum lycopersicum SlABF4 mRNA for ABA responsive transcription factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015058945.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_015058946.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 7
Refseq	XP_027768835.1	0.0	ABSCISIC ACID-INSENSITIVE 5-like protein 7
Swissprot	Q9M7Q3	8e-85	AI5L6_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 6
Swissprot	Q9M7Q4	4e-85	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	A0A3Q7IWK8	0.0	A0A3Q7IWK8_SOLLC; Uncharacterized protein
TrEMBL	G5EM38	0.0	G5EM38_SOLLC; ABA responsive transcription factor
STRING	Solyc11g044560.1.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA776	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49720.1	1e-68	abscisic acid responsive element-binding factor 1

Publications ? help Back to Top
Zhao Q, et al. Regulation and function of Arabidopsis AtGALK2 gene in abscisic acid response signaling. Mol. Biol. Rep., 2018. [PMID:24078097] Bao Y, et al. The tumor necrosis factor receptor-associated factor (TRAF)-like family protein SEVEN IN ABSENTIA 2 (SINA2) promotes drought tolerance in an ABA-dependent manner in Arabidopsis. New Phytol., 2014. 202(1): p. 174-87 [PMID:24350984] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Xie M, et al. AtWNK9 is regulated by ABA and dehydration and is involved in drought tolerance in Arabidopsis. Plant Physiol. Biochem., 2014. 77: p. 73-83 [PMID:24561249] Kim EY,Seo YS,Park KY,Kim SJ,Kim WT Overexpression of CaDSR6 increases tolerance to drought and salt stresses in transgenic Arabidopsis plants. Gene, 2014. 552(1): p. 146-54 [PMID:25234727] Zhang H, et al. The RING finger ubiquitin E3 ligase SDIR1 targets SDIR1-INTERACTING PROTEIN1 for degradation to modulate the salt stress response and ABA signaling in Arabidopsis. Plant Cell, 2015. 27(1): p. 214-27 [PMID:25616872] Baek D, et al. A Role for Arabidopsis miR399f in Salt, Drought, and ABA Signaling. Mol. Cells, 2016. 39(2): p. 111-8 [PMID:26674968] Bao Y, et al. Overexpression of the NDR1/HIN1-Like Gene NHL6 Modifies Seed Germination in Response to Abscisic Acid and Abiotic Stresses in Arabidopsis. PLoS ONE, 2016. 11(2): p. e0148572 [PMID:26849212] Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Li X, et al. Dual Function of NAC072 in ABF3-Mediated ABA-Responsive Gene Regulation in Arabidopsis. Front Plant Sci, 2016. 7: p. 1075 [PMID:27486475] Wang Z, et al. Overexpressing Arabidopsis ABF3 increases tolerance to multiple abiotic stresses and reduces leaf size in alfalfa. Plant Physiol. Biochem., 2016. 109: p. 199-208 [PMID:27721135] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Kerr TCC, et al. Ectopic expression of two AREB/ABF orthologs increases drought tolerance in cotton (Gossypium hirsutum). Plant Cell Environ., 2018. 41(5): p. 898-907 [PMID:28098349] Lyzenga WJ,Sullivan V,Liu H,Stone SL The Kinase Activity of Calcineurin B-like Interacting Protein Kinase 26 (CIPK26) Influences Its Own Stability and that of the ABA-regulated Ubiquitin Ligase, Keep on Going (KEG). Front Plant Sci, 2017. 8: p. 502 [PMID:28443108] Song C,Kim T,Chung WS,Lim CO The Arabidopsis Phytocystatin AtCYS5 Enhances Seed Germination and Seedling Growth under Heat Stress Conditions. Mol. Cells, 2017. 40(8): p. 577-586 [PMID:28756655] Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions. Plant Mol. Biol., 2018. 97(1-2): p. 149-163 [PMID:29680877] Kim HJ, et al. Confirmation of Drought Tolerance of Ectopically Expressed AtABF3 Gene in Soybean. Mol. Cells, 2018. 41(5): p. 413-422 [PMID:29754472]