PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen09g032470.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ZF-HD | ||||||||
Protein Properties | Length: 822aa MW: 92205.5 Da PI: 7.7855 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.7 | 5.1e-32 | 571 | 625 | 3 | 58 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++rY+eClkNhAas+Ggha+DGCgEfmps geegt+ alkCaAC+CH nFHR+e + Sopen09g032470.2 571 SIRYRECLKNHAASMGGHALDGCGEFMPS-GEEGTPGALKCAACNCHQNFHRKEID 625 789*************************9.999********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14111 | 3.0E-8 | 43 | 125 | IPR025558 | Domain of unknown function DUF4283 |
Pfam | PF14111 | 1.8E-10 | 325 | 409 | IPR025558 | Domain of unknown function DUF4283 |
Pfam | PF04770 | 7.1E-30 | 572 | 624 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.2E-30 | 573 | 624 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 5.0E-23 | 573 | 626 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.735 | 574 | 623 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 822 aa Download sequence Send to blast |
MAAPQRDFNI ENQEEEPKSK IVYLNYRRMP AVIFRKKYWD WNSMVAVCKL TMVGKFFIPK 60 PKMTKIRASF QAKLSLKGVA KIRSYDSYHV FIDFTAEEDY QSVLLKERVV VAGAIMEVFQ 120 WTPEFHDQFF VLKLSVDSFC LSSKKREAFG VVELDNTKKD EHIGGGNEYG TEESDSVACV 180 PEVTHSDSED RVASPIKCET SKLPSSVGIS CSGFSGLSSA PYRITGRIPS VTYESSSMCS 240 TELVPFRGTY LNHNNLKSYS REWNYGSKPT SEAADLACEA LSQPLYALSI VERHENQKSR 300 PPIEVQHSTY MGYPTLTFPR RYGESLVSDY KLTLLGNFSY KRPKMKEIRA DFKAQNPLSG 360 QVKIRNCSSR QVLILFTNEE DYYTVLYKKA IIVAGVLMQI SWSSPDFHHE VKQNIHPDFR 420 LSDAKSVNWN TDTSKLHPSI NGLLAPATDE KSMSLQVPAM SQCLSVPSIR PPLPLLAHSE 480 SVAGRLCADR LTTSGIYVPQ SCPKGIVGSP IFGSNEQAGR GNTFPRPSQA LNQQSLAQQH 540 NQLNSYKPNM TVRIAQLQPP STTSVSDITS SIRYRECLKN HAASMGGHAL DGCGEFMPSG 600 EEGTPGALKC AACNCHQNFH RKEIDGYQPM DDVGSHSRFS QPRNNSSSGS IQNQVPISLP 660 TQQYHRDYSD SCSPRSLVDS LQPYTQPPSP TSGSVYSQQA LERIEPSSIR PSYSYEMVNH 720 NAVQNGKQRE YFWSDSSRNT SRDHPSVRNE NWNFDMDKPL NNRTPDHIPL EFPAYPSRCQ 780 PQTVFTDEFP HLDIINNLLH EEHGTGRTLM SNSGSQRLNN GS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975448 | 0.0 | HG975448.1 Solanum pennellii chromosome ch09, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015086490.1 | 0.0 | uncharacterized protein LOC107029567 isoform X2 | ||||
TrEMBL | A0A3Q7I763 | 0.0 | A0A3Q7I763_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g089550.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14101 | 8 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 7e-26 | homeobox protein 33 |