PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g033410.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 688aa    MW: 75057.4 Da    PI: 6.3278
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g033410.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09272292526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C++f++ GtC++Gd+C +aHg
  Sopen06g033410.1 272 PCPDFRK-GTCQRGDSCEYAHG 292
                       8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.71E-1531155IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.0E-1733176IPR020683Ankyrin repeat-containing domain
PfamPF127962.4E-971144IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.84975153IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01275105IPR002110Ankyrin repeat
CDDcd002044.47E-1477172No hitNo description
PROSITE profilePS5008811.007110145IPR002110Ankyrin repeat
SMARTSM002480.0058110142IPR002110Ankyrin repeat
SMARTSM003561.0E-5267293IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4272294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.173272294IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-6272292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4300330IPR000571Zinc finger, CCCH-type
SMARTSM0035663302325IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.005302326IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MCSGSGSEVC STELAMEAKI QKQKELVPDF SLLLELSASD DIRNFQKAVE EEGHDINEVG  60
LWYVRRVGVK KMGYEERTPL MVAATFGSKQ VLSYMLEKGC VDVNQACGSD RATALHCAIS  120
GGSAALLEVV KLLVDASADV NLVDANGKRA VDLISGQSCC LNSRRKILEH LLGGCNTDEV  180
IDQIISEQAE EQLLLTPTVS KFGIEKKEYP VDPSLPDIKN GIYGTDDFRM YIFKVKPCSR  240
AYSHDWTECP FVHPGENARR RDPSKYHYSC VPCPDFRKGT CQRGDSCEYA HGIFECWLHP  300
AQYRTRMCKD ETNCNRRVCF FAHKPEELRP LYPSTGSAVL SPRSYSSGAS SLDITSITPL  360
ALGSPSVMVP PTSTPPMSPS AGASSVGGSL WTCQSSPATP TLQLPISRLK TAINARDMDI  420
GNGYLMQDQL MDELSALSSP SRWNSSSAKA AAFAASLNDR NGEFSRHGGL NPSNLDDIIA  480
NLDAKILSQL QGLSLDAVSP QLQSPKGMQM RQNMNQQHMT SYSSSQSSQS FRTSSSYGID  540
PSNAAATAVL SSRAAAFAKR SQSFIDRSGA GRLPNASAVL SNLSGWGSPD GKLDWGIQKE  600
ELNKLRKSAS FGLRSSGSRF PTTSESSVSD SLVEPDVSWV QSPHSPSMTS RQLATMEDQQ  660
YRLNTSRGSE TMPTWVDQLY MEQEQIVH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080219.10.0zinc finger CCCH domain-containing protein 66-like isoform X1
RefseqXP_015080220.10.0zinc finger CCCH domain-containing protein 66-like isoform X2
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A3Q7H1T70.0A0A3Q7H1T7_SOLLC; Uncharacterized protein
STRINGSolyc06g082010.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25582245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein