PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g027540.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | MYB_related | ||||||||
Protein Properties | Length: 300aa MW: 32753.6 Da PI: 9.8868 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.9 | 2.7e-14 | 96 | 140 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r + k+Rt+ q+ s+ qky Sopen06g027540.1 96 PWTEEEHKLFLLGLQKVGKGDWRGISRNFVKTRTPTQVASHAQKY 140 8*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.997 | 89 | 145 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.56E-17 | 91 | 146 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.2E-17 | 92 | 143 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.8E-10 | 93 | 143 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-11 | 95 | 140 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.7E-11 | 96 | 140 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.68E-9 | 96 | 141 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MSSVCSDKSS STPAVTGGGF GGEIMLFGVR VKVDPMRKSV SLNDLSQYEQ PNANNNNGGG 60 DNNESSKVAQ DEGYASADDA VQHQSNSGRE RKRGVPWTEE EHKLFLLGLQ KVGKGDWRGI 120 SRNFVKTRTP TQVASHAQKY FLRRSNLNRR RRRSSLFDIT TDSVSVMPIE EVENKQEIPV 180 PAPATLPTVE TTKTNAFLVA PAVAPIIFPV QVNKSRENPT LFRHDHGNSS MLVGPVPMFS 240 MPNPSKAIDL NANHNSTIEP SSLSLRLSLS LDQGQASSTR HSAYNVMSSF SNGESIIRVA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00149 | DAP | Transfer from AT1G19000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079146.1 | 0.0 | transcription factor MYB1R1 | ||||
Swissprot | Q2V9B0 | 1e-170 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | Q53J25 | 1e-175 | Q53J25_SOLLC; Putative DNA binding protein, identical | ||||
STRING | Solyc06g071230.2.1 | 1e-176 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2574 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 4e-59 | MYB_related family protein |
Publications ? help Back to Top | |||
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