PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen06g022850.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 497aa    MW: 56848.4 Da    PI: 4.2978
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen06g022850.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM60.46.1e-1961383127
               NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.......kvka.eek.ew.yfFskrdkkyatgkrknr..atksgyW 83 
                        G+rFhPtd+el+  yL + +++++l  + +i+e+d+y+ +Pw           +    +++ +  yf s+r+kk+ +  r +r  a   g+W
  Sopen06g022850.1   6 EGYRFHPTDSELL-TYLLRFITENNLCDNGFITECDVYNQQPWITYGygrhcggE--DdGDTnNFrYFISPRHKKSDN--RFSRhvANGLGTW 93 
                       69***********.88999999999777799************986345654431..132332335888888888765..666632555789* PP

               NAM  84 katgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyr 127
                       k+  k k + sk+++   +glkk+L +   +   ++  +W+m+ey 
  Sopen06g022850.1  94 KQRDKGKWIRSKQSKPlnMGLKKSLDYD-TNMCCPHDGKWLMKEYV 138
                       ***********86655569*******97.67777789********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.4764163IPR003441NAC domain
PfamPF023655.6E-156138IPR003441NAC domain
SuperFamilySSF1019414.84E-207163IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MEFEEEGYRF HPTDSELLTY LLRFITENNL CDNGFITECD VYNQQPWITY GYGRHCGGED  60
DGDTNNFRYF ISPRHKKSDN RFSRHVANGL GTWKQRDKGK WIRSKQSKPL NMGLKKSLDY  120
DTNMCCPHDG KWLMKEYVFC EAILKKFKNS NYKDYCICAI KTKNSSNPSP SSNASTTDVN  180
EHKLDTEVIS GINSVEPRMD QAITPVNIVE PVLRIQESLS DEEKINALLI EYNIDPELTQ  240
MRNEDYGMIN HPINVVENPA MEAEVQGNGV SEFENTIPEN NLPAHQQQGF IVDVNEDCNA  300
YSEFQTNNSS FVGLLTGYGD YAIRNNWELN TFSPIQEPMI PDFANVKSNI TMPDKYGTLA  360
EYMDAGVLMN PENAFDFSKQ SIVESNQVQI TQEAAAGEAN RLLGQTAPFF QIQEFVMPEM  420
FDMGYTLLET QQEPKPQEEC KTLCETEKSS FLDDLTEALL DDVPLNDRLN INRESKIILL  480
LDQQSWQSNA HLQDMLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754450.0HG975445.1 Solanum pennellii chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773376.10.0NAC domain containing protein 52-like
TrEMBLA0A3Q7GYD70.0A0A3Q7GYD7_SOLLC; Uncharacterized protein
STRINGSolyc06g063380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1427357
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-13NAC-like, activated by AP3/PI