PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g002280.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 253aa    MW: 28748.5 Da    PI: 8.7498
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g002280.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00028105127123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C k F ++  L  H++ H
  Sopen05g002280.1 105 FECQYCLKQFANSQALGGHQNAH 127
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.22E-5103132No hitNo description
Gene3DG3DSA:3.30.160.606.8E-5103131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.1E-5105129IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.448105132IPR007087Zinc finger, C2H2
PROSITE patternPS000280107127IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MAKDVVSSTF QSPSSNINGE NYHESSSKSC IENNNNNNNN NKKLKIFGFE LIDNPKKSPK  60
KVQNNSSKED QESVNSSSVS TVSSGNIHHN QEKISSNHEE IMKKFECQYC LKQFANSQAL  120
GGHQNAHKKE RMRKKRLQLQ ARKASLSCYL QPFHNQNYNN NNNNIINYQF YDPQFNVYEE  180
SQISFNPNYD YQVSSEGGGA NWLFHQDSNN CTFTLTHGGN NYMKPPSTIL DNSSSTKQKS  240
SCKHLDLQLG LSL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075807.10.0zinc finger protein 5
TrEMBLM1B9Q81e-137M1B9Q8_SOLTU; Uncharacterized protein
STRINGSolyc05g006310.1.11e-151(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51362130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.15e-15zinc finger protein 5