PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen04g027330.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | Trihelix | ||||||||
Protein Properties | Length: 652aa MW: 71831.2 Da PI: 6.6261 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.1 | 2.7e-29 | 58 | 142 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+ aL+++r+em+ +r+++lk+plWeevs+km++ gf+rs+k+Ckek+en+ k++k++k+g+ ++ + +++++f+qlea Sopen04g027330.1 58 RWPRQETIALLKIRSEMDVIFRDSSLKGPLWEEVSRKMADLGFHRSSKKCKEKFENVYKYHKRTKDGRASK--ADGKNYRFFEQLEA 142 8********************************************************************95..67778*******85 PP | |||||||
2 | trihelix | 103.7 | 1.3e-32 | 459 | 544 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k ev aLi++r++++ +++++ k+plWee+s+ m++ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a Sopen04g027330.1 459 RWPKAEVEALIKLRTNLDVKYQENGPKGPLWEEISSGMKKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 544 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.027 | 51 | 115 | IPR017877 | Myb-like domain |
SMART | SM00717 | 3.4E-4 | 55 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.66E-25 | 57 | 122 | No hit | No description |
Pfam | PF13837 | 8.9E-19 | 57 | 143 | No hit | No description |
PRINTS | PR01217 | 3.5E-9 | 153 | 165 | No hit | No description |
PRINTS | PR01217 | 3.5E-9 | 192 | 204 | No hit | No description |
PRINTS | PR01217 | 3.5E-9 | 215 | 236 | No hit | No description |
PRINTS | PR01217 | 3.5E-9 | 381 | 406 | No hit | No description |
PROSITE profile | PS50090 | 7.457 | 452 | 516 | IPR017877 | Myb-like domain |
SMART | SM00717 | 4.6E-4 | 456 | 518 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 3.39E-28 | 458 | 523 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 458 | 515 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.3E-22 | 458 | 545 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 652 aa Download sequence Send to blast |
MMLGVSGLVS SEGGGDNPES GGGAGSGGSS EIGLGGGSGG GGGGFMTEDG ERNSGGNRWP 60 RQETIALLKI RSEMDVIFRD SSLKGPLWEE VSRKMADLGF HRSSKKCKEK FENVYKYHKR 120 TKDGRASKAD GKNYRFFEQL EALENITSHH SLMPPSSNTR PPPPPLEATP INMAMPMASS 180 NVQVTASQGT IPHHVTISSA PPPPNSLFAP SHQNAPSSSP VPLPPPPSQQ PSPQPAVNPI 240 NNIPQQVNAS AMSYSTSSST SSDEDIQRRH KKKRKWKDYF EKFTKDVINK QEESHRRFLE 300 KLEKREHDRM VREEAWKVQE MARMNREHDL LVQERAMAAA KDAAVISFLQ KITEQQNIQI 360 PNSINVGPPS AQVQIQLPEN PLSAPVPTQI QPTTVTAAPP QPAPAPVPVS LPVTIPAPVP 420 ALIPSLSLPL TPPVPSKNME LVPKSDNGGD SYSPASSSRW PKAEVEALIK LRTNLDVKYQ 480 ENGPKGPLWE EISSGMKKIG YNRNAKRCKE KWENINKYFK KVKESNKKRP EDSKTCPYFH 540 QLDALYKEKA KNPETASLTS SFNPSFALNP DNNQMAPIMA RPEQQWPLPQ HHESTTRIDH 600 ENESDNMDED DHDDDDDEDD EDENNAYEIV ANKQQSSMAA ANTTTSTATT TV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 266 | 273 | QRRHKKKR |
2 | 266 | 274 | QRRHKKKRK |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073652.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
TrEMBL | M1C8A3 | 0.0 | M1C8A3_SOLTU; Uncharacterized protein | ||||
STRING | Solyc04g071360.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G76890.2 | 2e-77 | Trihelix family protein |