PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen04g001150.2

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 228aa MW: 25210 Da PI: 7.2964

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g001150.2	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.2	3.9e-10	111	158	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Sopen04g001150.2 111 SHSLAERARREKISDRMKILQDLVPGC----NKVIGKALVLDEIINYVQSLQ 158 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.09E-17	105	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.28E-9	105	162	No hit	No description
PROSITE profile	PS50888	15.421	107	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.9E-18	107	176	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-7	111	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-10	113	163	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MDPHSTIMSA FQTATNLAEI WPYHHLIDHT TNHAARKRRD DDESAIGVST SGNALQTESD 60 SKRLKATRSN ENGEYSGGNS GKSSEQPAKP PAEPPKDYIH VRARRGQATD SHSLAERARR 120 EKISDRMKIL QDLVPGCNKV IGKALVLDEI INYVQSLQRQ VEFLSMKLEA VNTRVTPTIE 180 GIPTKDFGQQ TFETNAMAFG SQGTREYAGG TSPDWLHMQI GGGFERTT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269\|PubMed:23715469}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-100	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015074344.1	1e-172	transcription factor BHLH089-like isoform X1
Swissprot	Q69WS3	1e-73	BH094_ORYSJ; Transcription factor BHLH094
TrEMBL	A0A3Q7FY75	1e-155	A0A3Q7FY75_SOLLC; Uncharacterized protein
STRING	Solyc04g005130.2.1	1e-156	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1287	24	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	1e-78	BIG PETAL P