PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g034450.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 450aa    MW: 50138.1 Da    PI: 8.2309
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g034450.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011100119221
                       EETTTTEEESSHHHHHHHHH CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                       +C+ CgksF ++  L  H++
  Sopen03g034450.1 100 VCKECGKSFQSWKALFGHMK 119
                       6******************7 PP
2zf-C2H210.90.0014353375123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+C k F++   L  H r+H
  Sopen03g034450.1 353 HECPICYKIFPSGQALGGHKRSH 375
                       79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.0E-41235IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-91234No hitNo description
SMARTSM003550.681234IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.4521239IPR007087Zinc finger, C2H2
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-994121No hitNo description
PROSITE profilePS5015710.76299126IPR007087Zinc finger, C2H2
SMARTSM003550.007899121IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.5E-4100122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280101121IPR007087Zinc finger, C2H2
PfamPF139123.1E-8101123IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741289316IPR007087Zinc finger, C2H2
PfamPF139121.1E-10289312IPR007087Zinc finger, C2H2
SuperFamilySSF576677.59E-7289311No hitNo description
SMARTSM003550.16289311IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280291311IPR007087Zinc finger, C2H2
SuperFamilySSF576677.59E-7348375No hitNo description
PfamPF139125.9E-12353376IPR007087Zinc finger, C2H2
PROSITE profilePS501578.891353375IPR007087Zinc finger, C2H2
SMARTSM003550.22353375IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280355375IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MGYEDHEVLM KHVCKFCNKS FHCGRSLGGH MRSHMVNTTD GETSRKKLPA YIVSNSTTNN  60
NNRNVNLDIG NQDISYVLRN NPKKTSKFSE DLVDTLLPKV CKECGKSFQS WKALFGHMKC  120
HSSSSSVEED SWNSVSESDT EAAAAAAAAA AAATNKKKRS SRKRYNMAPA ATSSSLTVAA  180
NGSSPCVSEI EHEQEEIAMS LIMLSRDVSN WVGNNHVTDQ CSDNNSQFLT KSELMKKVKN  240
GKTEQGESSK SLTNGQKRNR TEVLDDEKKK KIKMENENRV VISDPKIKFE CTTCNKGFHS  300
YQALGGHRAS HKNSKGDQTC AATHIDLAKQ IKTGDNETEF GQNCGSKKQL KMHECPICYK  360
IFPSGQALGG HKRSHLIAEA KKKNHNQTVE VEKPTPEIKN FLDLNLPAPV EEEDHVLDSS  420
STHEQQHTEF QQWWIDSTHK HEQLLGLLSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015068380.10.0zinc finger protein ZAT1-like
TrEMBLA0A3Q7FT170.0A0A3Q7FT17_SOLLC; Uncharacterized protein
STRINGSolyc03g115450.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44812241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.18e-28C2H2-like zinc finger protein