PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g028400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 256aa MW: 29511.2 Da PI: 8.6209 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 142 | 3.5e-44 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrF+Ptdee+v +yL +k+ + +l++ ++i+e++i+k +Pw+Lp v e++ yfFs+++ ky++g+r+nrat gyWk +g dk+++ Sopen03g028400.1 14 LPPGFRFQPTDEEIVFQYLIRKTFSCPLPA-SIIPEINICKNDPWNLPGDV---EQDRYFFSNKEAKYRNGNRANRATIGGYWKPSGLDKQII 102 79****************************.89***************554...5689*********************************99 PP NAM 94 sk.kgelvglkktLvfykg.rapkgektdWvmheyrl 128 ++ ++ +g+kktLvfykg +a+++ +tdW+mheyrl Sopen03g028400.1 103 CSkRKPIIGMKKTLVFYKGkSASQAYRTDWIMHEYRL 139 97455569*********995678889*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-49 | 11 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.538 | 14 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-23 | 15 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MDKFNFVKDG AIKLPPGFRF QPTDEEIVFQ YLIRKTFSCP LPASIIPEIN ICKNDPWNLP 60 GDVEQDRYFF SNKEAKYRNG NRANRATIGG YWKPSGLDKQ IICSKRKPII GMKKTLVFYK 120 GKSASQAYRT DWIMHEYRLV LPKNSSSNLH VHFNKSSSQQ NNSLVQIGNW VLCHIFLKKR 180 NGKCDEEIIE ANYHDYNYKA NDEHNNVDYY DFMREDNLSD TRAAASSCSS SLSINNYDAN 240 EVSSCPSSLL QHQQPL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-39 | 12 | 183 | 15 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 6e-39 | 12 | 183 | 15 | 170 | NAC domain-containing protein 19 |
4dul_B | 6e-39 | 12 | 183 | 15 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975442 | 1e-167 | HG975442.1 Solanum pennellii chromosome ch03, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015069739.1 | 0.0 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 2e-68 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A3Q7GCT8 | 1e-173 | A0A3Q7GCT8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc03g097650.2.1 | 1e-174 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1387 | 23 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 2e-70 | NAC domain containing protein 83 |
Publications ? help Back to Top | |||
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