PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen02g023630.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family MYB_related
Protein Properties Length: 501aa    MW: 56490.9 Da    PI: 10.6963
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen02g023630.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-091248138
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                      +++W t+E+++l  av+++G+++W+ +a+++   Rtl+
  Sopen02g023630.1 12 KMNWGTWEELILGSAVRRHGTRDWNVVASELR-ARTLY 48
                      689*****************************.99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.41E-5764IPR009057Homeodomain-like
PROSITE profilePS500906.237765IPR017877Myb-like domain
SMARTSM007173.9E-41167IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-51264IPR009057Homeodomain-like
PfamPF002492.7E-71246IPR001005SANT/Myb domain
CDDcd001671.33E-51464No hitNo description
Gene3DG3DSA:1.20.920.109.3E-17245403IPR001487Bromodomain
SMARTSM002973.8E-17270374IPR001487Bromodomain
CDDcd043693.87E-14273369No hitNo description
SuperFamilySSF473705.49E-18275374IPR001487Bromodomain
PfamPF004391.9E-10279358IPR001487Bromodomain
PROSITE profilePS5001410.387285355IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
METETMGVGV GKMNWGTWEE LILGSAVRRH GTRDWNVVAS ELRARTLYPH CFTPEACKAR  60
YEELRKRYSG CTALFEELRK RRVEELKREL VRSESSIGSL ESKIERLQAE RERSDQIDHS  120
LSHTKSPAPQ TKSEDIESSV KEEAKDGLSA GSFTLDIRTN GSPESQVPTI PSATEAVVKL  180
ELSESWGRDK APSTSKVPDS ANGNGGAVRK RRGKRRRKDT VWDAKEGSIE DSDNVCSTSL  240
ASTSHCKEVL TSCDQSNRRS AASDHIVGLS RFRNDDLMRI FNSITQHEAA MVFRHRLDSQ  300
KRARYKKMIR RHMDIETARS RLANWSIRTP GELFRDFLLL ANNAMVFYSK RTREYKAAMA  360
LRDIVTRAYR EHYKGSYHKA TSSHLPLPII GNPPGKPRSV RPRPSKEKLQ AKYGNNIIAG  420
TLGRQNHKPG DAADSKVPSQ TPSSAKKGFK KPGKIKCGST TETVNPQSKV QAKESSQHNI  480
KVKKEHRVKA VTKERKRARQ K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16481RKRYSGCTALFEELRKRR
2210218RRGKRRRKD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754410.0HG975441.1 Solanum pennellii chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015064053.10.0uncharacterized protein LOC107009260 isoform X1
TrEMBLA0A3Q7F4890.0A0A3Q7F489_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000577580.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55341924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.12e-13DNA-binding bromodomain-containing protein