PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g041490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | GeBP | ||||||||
Protein Properties | Length: 453aa MW: 48594.8 Da PI: 6.1255 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 110.3 | 1.3e-34 | 90 | 191 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgk.....spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 klfqrlw++eDei lL+G++d+++++g + + d++afye++k + +++++k+qlveK+rrLKkK+++ v+k+ sgk+++f+++hdq + Sopen01g041490.1 90 KLFQRLWTDEDEIELLRGFLDYTTQRGLntsspQHHYDTTAFYEQIKTKFQLDFNKNQLVEKLRRLKKKYRTVVSKMGSGKDFVFKSAHDQVT 182 579************************9776433445******************************************************** PP DUF573 89 felskkiWg 97 f++s++iW Sopen01g041490.1 183 FDISNRIWS 191 ********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.4E-33 | 92 | 191 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 453 aa Download sequence Send to blast |
MDSVPNRHHQ ASYDNLDYEV DMDVEGDEDS TSSPSIAGEV TIAVAGVSTG DSGAGMMNPG 60 KRPRIDDFAI PVVLPGAVKK PSAGFDESRK LFQRLWTDED EIELLRGFLD YTTQRGLNTS 120 SPQHHYDTTA FYEQIKTKFQ LDFNKNQLVE KLRRLKKKYR TVVSKMGSGK DFVFKSAHDQ 180 VTFDISNRIW STGGSYARSS PGGGSVGFSA PPLEDGGVGL GLEEDLDVNP NPNPDSIVLY 240 HSPKFNLNSN PNGIAIKTPR SHKRSPIPLE AVKVEHQPFQ PPGIRINVQM PATNSNPVAA 300 APAAPPVSGV AAPQVSGVAT PPVGGTAAPL VAGVAAPAPT TGAASVPNLI EETVRNCVSP 360 IFKELLNNVA NLNGSARGFG FGFGGIGMSP MGLGMSPMGL GFGGGAMSME MMRDEKWRKQ 420 QMLELEVYSK RLELVQDQVK AQLEELRSMG SNN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015062587.1 | 0.0 | probable transcription factor At5g28040 | ||||
TrEMBL | A0A3Q7EMN3 | 0.0 | A0A3Q7EMN3_SOLLC; Uncharacterized protein | ||||
STRING | Solyc01g097890.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4052 | 24 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 3e-45 | DNA-binding storekeeper protein-related transcriptional regulator |