PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen01g034230.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 726aa    MW: 78578.9 Da    PI: 6.4483
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen01g034230.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.54.1e-07303323526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f++ G C++Gd C +aHg
  Sopen01g034230.1 303 PCPEFRK-GACRRGDMCEYAHG 323
                       8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484035.44E-1630157IPR020683Ankyrin repeat-containing domain
PfamPF127964.5E-1165147IPR020683Ankyrin repeat-containing domain
CDDcd002043.80E-1577156No hitNo description
Gene3DG3DSA:1.25.40.202.9E-1777158IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003378108IPR002110Ankyrin repeat
PROSITE profilePS5029715.80478186IPR020683Ankyrin repeat-containing domain
SMARTSM002486.1E-5113145IPR002110Ankyrin repeat
PROSITE profilePS5008810.953113148IPR002110Ankyrin repeat
SMARTSM003569.5E-6298324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.981303325IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-4303323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4331361IPR000571Zinc finger, CCCH-type
SMARTSM0035681333356IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MCTGPERPNQ SVTDSTSSMK GITKLTVETE DSFSSLLELA ANNDLEGFKR SVELDASAID  60
EVGLWLVRKK GAKQIVNEER TPLMVAATYG SLDVLKLIIS NPVVDVNRAC GPNKWTALHC  120
AASSGSGNVI DAVKLLLSAG GDPNVEDANG QRPADVIVVP PKLPGTRASI EKLLLNNSSD  180
GSVGDCKLTV SVATSDASSP ILSSSPENGS PCSSLESSSS PMASKFSDLP ANSAREKKEY  240
PIDPSLPDIQ NSIYSTDEFR MFSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS  300
CVPCPEFRKG ACRRGDMCEY AHGVFECWLH PAQYRTRLCK DGTSCARRIC FFAHTTEELR  360
PLYVSTGSAV PSPRSAASAA SVMDMAAALN LFPGSPSAHS VMSPSAFNQP MSPTANGMSH  420
PSAPWPQPNV PTLHLPGSNL QSSRLRSSLS ARDIPPEDFN MLQDFDAQQL VLNDMACYSQ  480
PRPNSASLNR SGRSKTLTPS NLEELFSAEM NSSPRYSDQA AACGVFSPSH KSAYFNQFQH  540
QQNMLSPINT NVFSPKNIEH PLLQASFGVS SPGRMSPRSM EPISPMSARL SAFAQREKQQ  600
QQLRSLSSRD LGSNNAPVVG SPVGNSWSNW GSPNEKVDWS VNGSGLRQLP RSSSIEQLNT  660
GEEPDLSWVQ SLVKESPTEI KEKQAAPNSV AAPSGESLKT SSQIDSVDNS VLGAWLEQMQ  720
LDQLVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754400.0HG975440.1 Solanum pennellii chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057519.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A3Q7EIZ50.0A0A3Q7EIZ5_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000175450.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8832488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]