PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen01g033640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 362aa MW: 40597.2 Da PI: 5.4261 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 36.2 | 7.5e-12 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +ien++ r+v++ kR +g l K EL +LCd+e a ++ s+ Sopen01g033640.1 10 FIENNTERKVSYRKRIKGFLTKVRELNILCDVEMATLVNSPY 51 8**********************************9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.465 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.2E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.81E-18 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.06E-15 | 2 | 82 | No hit | No description |
PRINTS | PR00404 | 2.6E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.0E-11 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-8 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MGRKKVKLAF IENNTERKVS YRKRIKGFLT KVRELNILCD VEMATLVNSP YQNEPEIFPN 60 HEASTDLFTK FSNLPEEDKS KNMKTQENVI MKRIKKIEKE LEKVRQENKK MEYTNHMYGL 120 LNGEEMPNSK HPGYLNDLCY VINKHLKLID DSIEAKTHEE GSTSNAPQPF VGPMDSGGTN 180 FDISWAPLLA HVDDPVLSEI PLLVPSTVLG RTNFERPRAP FNLVPDVIPT SMVPLTAPLM 240 GPSSASAQVP EFMFPLKTPL PSDLSLVPSS SSSQRYPEIA YTMSSPMLVP PVAPQLDHSM 300 NILSMSASGP VENNVNDSFG IPKSPSFSEL LSFTDDEIQT LIDDTSFNTH VQDSNPHHNN 360 WI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027769906.1 | 0.0 | uncharacterized protein LOC114075653 | ||||
TrEMBL | M1C7X3 | 1e-179 | M1C7X3_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400061724 | 1e-180 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1329 | 10 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26630.1 | 2e-26 | M-type_MADS family protein |