PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc12g056510.1.1 | ||||||||
Common Name | LOC101262091 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | Trihelix | ||||||||
Protein Properties | Length: 652aa MW: 72092.5 Da PI: 7.0805 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 93.8 | 1.7e-29 | 72 | 155 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rW++qe+laL+++r+em+ +++++lk+plWeevs+k++e g++rs+k+Ckek+en+ k+++++k+g+ ++ + +t+++fdql+ Solyc12g056510.1.1 72 RWPRQETLALLKIRSEMDVVFKDSSLKGPLWEEVSRKLAELGYHRSAKKCKEKFENVYKYHRRTKDGRASK--ADGKTYRFFDQLQ 155 8********************************************************************96..66678******98 PP | |||||||
2 | trihelix | 101.7 | 5.7e-32 | 457 | 542 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi +r+ ++ +++++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+qlea Solyc12g056510.1.1 457 RWPKEEIEALISLRTCLDLKYQENGPKGPLWEEISSGMRKIGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLEA 542 8*********************************************************************8.99***********85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.143 | 65 | 129 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.002 | 69 | 131 | IPR001005 | SANT/Myb domain |
CDD | cd12203 | 1.88E-24 | 71 | 136 | No hit | No description |
Pfam | PF13837 | 4.9E-19 | 71 | 157 | No hit | No description |
SMART | SM00717 | 0.0024 | 454 | 516 | IPR001005 | SANT/Myb domain |
Pfam | PF13837 | 1.7E-21 | 456 | 543 | No hit | No description |
PROSITE profile | PS50090 | 7.399 | 456 | 514 | IPR017877 | Myb-like domain |
CDD | cd12203 | 1.42E-27 | 456 | 521 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 9.5E-4 | 456 | 513 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 652 aa Download sequence Send to blast |
MLGVSSSLIA SSNTSITAGA AGDGAAISAA PSQLAPPPQE APESGGSSEG GGGGGDLSIG 60 GEDGERNSGG NRWPRQETLA LLKIRSEMDV VFKDSSLKGP LWEEVSRKLA ELGYHRSAKK 120 CKEKFENVYK YHRRTKDGRA SKADGKTYRF FDQLQALENN PSSHSNIPPP PLAATPITMA 180 MPMRSGNNSA NPPMPTPTPT PQNHNHFFSV SQKSVVTGAA QPAVMTAPAL PLSQVPIGNN 240 NLNQMHRPQG NTTTTKTSFL SNSTSSSSST SSDEDIQRRQ MKKRKWKEFF ESLMKDVIEK 300 QEELQKKFLE TLEKRERDRL MREEAWRVQE MARLNREHDL LVQERSMAAA KDATIIAFLQ 360 KITEQQNTQT PNSTNNTSPS PFPIAQIQLK LSEKPFSTPP QPQPQPSATA VSLPMTIHTP 420 TPAPPQTLTL PVVSSKSLEP PKSDNGGENF SPASSSRWPK EEIEALISLR TCLDLKYQEN 480 GPKGPLWEEI SSGMRKIGYN RNAKRCKEKW ENINKYFKKV KESNKKRPED SKTCPYFHQL 540 EALYKEKAKL EPVPHNTTFG LTPQNNPPPP PPPIMAQPEQ QWPIPQNQLH QQNRDHHHDN 600 ESDSMDHDLE EDEDEDEEDE GNGYEIIITN KQQSSSMAAT PVTTTTSAAA V* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 276 | 284 | QRRQMKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.8271 | 0.0 | callus| fruit| leaf |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00244 | DAP | Transfer from AT1G76890 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc12g056510.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC232935 | 1e-15 | Solanum lycopersicum chromosome 9 clone C09HBa0067J16, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010314480.1 | 0.0 | trihelix transcription factor GT-2-like | ||||
TrEMBL | A0A3Q7JB43 | 0.0 | A0A3Q7JB43_SOLLC; Uncharacterized protein | ||||
STRING | Solyc12g056510.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2402 | 24 | 59 | Representative plant | OGRP663 | 15 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76880.1 | 9e-65 | Trihelix family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc12g056510.1.1 |
Entrez Gene | 101262091 |
Publications ? help Back to Top | |||
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