PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc11g068950.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TALE
Protein Properties Length: 662aa    MW: 72927.3 Da    PI: 7.371
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc11g068950.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.1e-093894261954
                         HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
            Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                         Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  Solyc11g068950.1.1 389 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 426
                         554459******************************88 PP
2BELL115.52.7e-37253324172
                BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                         +rqelq+kkakL+s+l+eVd+rY+qy++q+q+++ sFe+ +g+gs+k+Yt+lAl++iS++FrcLkdai++qi
  Solyc11g068950.1.1 253 QRQELQMKKAKLVSMLDEVDQRYRQYHHQMQMIATSFEQTTGIGSSKSYTQLALHTISKQFRCLKDAISGQI 324
                         69*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.4E-49184322IPR006563POX domain
PfamPF075264.5E-45187321IPR006563POX domain
PROSITE profilePS5007112.131367430IPR001356Homeobox domain
SMARTSM003894.2E-10370434IPR001356Homeobox domain
CDDcd000863.58E-12370431No hitNo description
SuperFamilySSF466893.98E-17371437IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-29373437IPR009057Homeodomain-like
PfamPF059202.6E-18387426IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MFLLNSVASG NFPHVSLPLQ AHAQGHLVGV PLPGDFQDSN RPSIQEISAS HHGLLSRLWT  60
SGDQSTPRGG GGGGEGNGSK SHIPSSTVVS PNSGSVGGTT TDFASQLGFQ RPGLVSPTQA  120
HHQGLSLSLS PQQQMNFGSS LPLDHREIST TNHQVGILSS SPGVNTSNID HTRGSGALSS  180
FSISNGMILG SKYLKVAQDL LDEVVSVGKN IKLSEVGGAK EKHKLENELI SLASDDIESN  240
TQKNSGVELT TAQRQELQMK KAKLVSMLDE VDQRYRQYHH QMQMIATSFE QTTGIGSSKS  300
YTQLALHTIS KQFRCLKDAI SGQIKDTNKT LGEEENIGGK IEGSKLKFVD HHLRQQRALQ  360
QLGMMQTNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKDS DKIMLAKQTG LTRSQVSNWF  420
INARVRLWKP MVEEMYMEEV KKNNQEQNGL DQKIIEPNNN EIVGSKSSAP QEKLPISSNI  480
IHDATSNDIS TSTISTSPTG GGGSMPAQTV GGFSLIRSLN MDNIDDQRNN KKARNEMQSS  540
TIISMEREIM NKVKSEKFNN TQTRECYTLM TPSYTMDDDQ QFGTRFNNQN HEQLATTFHQ  600
GSNGHVSLTL GLPPNSENQH NYIGLESHYN QPTHHPNISY ENIDFQSGKR YATQLLQDYV  660
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A4e-16376434563Homeobox protein Meis2
3k2a_B4e-16376434563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.194590.0callus| cell culture| floral bud| flower| fruit| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc11g068950.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010313381.10.0BEL1-like homeodomain protein 1
RefseqXP_025884077.10.0BEL1-like homeodomain protein 1
TrEMBLA0A3Q7JPH90.0A0A3Q7JPH9_SOLLC; Uncharacterized protein
STRINGSolyc11g068950.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14782467
Representative plantOGRP13316172
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.31e-91BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]