PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc10g080200.1.1 | ||||||||
Common Name | LOC101256930 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 273aa MW: 30271.1 Da PI: 8.1347 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00017 | 210 | 232 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+ +Fs+ L++H ++ H Solyc10g080200.1.1 210 QCPQCTLRFSSVTALVSHVQKvH 232 7******************9988 PP | |||||||
2 | zf-C2H2 | 16.2 | 2.9e-05 | 244 | 266 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp C+k F+++ +L+ H + H Solyc10g080200.1.1 244 VCPRCSKGFRDPVSLVEHVEReH 266 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 4.71E-11 | 6 | 50 | No hit | No description |
Gene3D | G3DSA:4.10.1110.10 | 2.4E-9 | 10 | 50 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS51039 | 7.462 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0029 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.5E-11 | 13 | 50 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 7.7E-10 | 91 | 146 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 6.67E-9 | 93 | 147 | No hit | No description |
PROSITE profile | PS51039 | 7.757 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.047 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.7E-7 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.017 | 209 | 232 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.57E-5 | 210 | 262 | No hit | No description |
Pfam | PF13894 | 7.3E-4 | 210 | 232 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 211 | 232 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.2 | 243 | 266 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 243 | 271 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 245 | 266 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MGTPEFPNLG KHCFVDDCRQ IDFLPFTCDC CHQVFCLEHR SYNRHHCPTA NNNDVTVVVC 60 PLCAKGVHLI PDEDPNITWE SHVNTDCDPS NYEKATKKRK CPVPGCREFL TFSNTIRCRE 120 CTVDHCLKHR FGPDHKCPGR KKPEAAFSFM NFRTGSRNGE PNKAPATSSS SWASSFFKAA 180 EAGMAKLGSG RGQSSNATNH SGSANRQVEQ CPQCTLRFSS VTALVSHVQK VHEKNDVMNL 240 TVDVCPRCSK GFRDPVSLVE HVEREHKGTS KA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Les.16310 | 0.0 | flower| fruit| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc10g080200.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ442198 | 0.0 | Solanum lycopersicum stress-associated protein 12 (SAP12) gene, partial cds |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004249266.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
Swissprot | Q8VZ42 | 1e-119 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A3Q7ILC7 | 0.0 | A0A3Q7ILC7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc10g080200.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5311 | 22 | 37 | Representative plant | OGRP1909 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-117 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc10g080200.1.1 |
Entrez Gene | 101256930 |
Publications ? help Back to Top | |||
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