PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc09g008440.1.1 | ||||||||
Common Name | LOC101256516 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 311aa MW: 34951.9 Da PI: 8.165 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.9 | 0.00032 | 124 | 146 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++sF++ L H +H Solyc09g008440.1.1 124 YQCKTCNRSFPSFQALGGHRASH 146 9***********99999998887 PP | |||||||
2 | zf-C2H2 | 13.1 | 0.00028 | 209 | 231 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F++ L H+r+H Solyc09g008440.1.1 209 HECSICGAEFNSGQALGGHMRRH 231 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.83E-8 | 123 | 146 | No hit | No description |
Pfam | PF13912 | 8.6E-13 | 123 | 148 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.679 | 124 | 151 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.03 | 124 | 146 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 126 | 146 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 8.83E-8 | 204 | 231 | No hit | No description |
Pfam | PF13912 | 5.1E-13 | 208 | 232 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.577 | 209 | 231 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 209 | 231 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 211 | 231 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MIKIKKCYTM EVHDDRGCDQ DQQLNMVIKR RRTKRPRPPS PLTLGITTSS CSTVEGASSG 60 ELVDGHVANS LLRSNNCGGM IDDKIVRNTN QEEEDMANCL ILLAQGHNFQ KSSSLSQSPT 120 LDVYQCKTCN RSFPSFQALG GHRASHKKPK TLEDQIKNLK SNDHHHHQQA ENNIRLKLNN 180 NDDHVTTLSL QIPNNSNNNS NNKNKNRVHE CSICGAEFNS GQALGGHMRR HRPLPNSIAI 240 TSNHHIHEES HHHHHHDQQI IKNNTRAFLS LDLNLPAPED DHRPENSKFT FATKEQVIVF 300 SASSLVDCHY * |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 37 | KRPRP |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc09g008440.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254233 | 6e-06 | Solanum lycopersicum strain Heinz 1706 chromosome 12 clone slm-12l9 map 12, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004246607.1 | 0.0 | zinc finger protein ZAT5 | ||||
TrEMBL | A0A3Q7HYQ7 | 0.0 | A0A3Q7HYQ7_SOLLC; Uncharacterized protein | ||||
STRING | Solyc09g008440.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1262 | 24 | 80 | Representative plant | OGRP2350 | 10 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03510.1 | 2e-48 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Solyc09g008440.1.1 |
Entrez Gene | 101256516 |
Publications ? help Back to Top | |||
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