PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g083170.1.1
Common NameLOC101250434
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 388aa    MW: 43820 Da    PI: 8.0408
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g083170.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-13214260354
                         HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         ++h e+Er+RR+++N++f  Lr+++P+       K++Ka+ L  Av YI++L
  Solyc08g083170.1.1 214 KNHVEAERQRREKLNHRFYALRSVVPNV-----SKMDKASLLADAVTYINEL 260
                         589************************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142154.6E-3417161IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-18209280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.933211260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.1E-11214260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.50E-14214265No hitNo description
Gene3DG3DSA:4.10.280.105.9E-18215274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-16217266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MQDFISTSSS FSSTSLLQKR LHYIIHNRQE WWVYGIFWQA SKDANGRLIF SWGDGHFRDL  60
ALAKVHNANV SDMEMFYAVS APNCFLSEDD LIVHAYNSGS YVWLNNYYEL QIYNYDRAKE  120
AHLHGIRTLL CISTPHGVVE LGSSQVIQEN LELVQLIKSL FGQINDHGFN FVPLGDPMDT  180
KTITMGSDSG NSDESSAMNK DSPKKRARKS TTAKNHVEAE RQRREKLNHR FYALRSVVPN  240
VSKMDKASLL ADAVTYINEL KAKVEELKAK IEVSTKKLIQ KRNCVSSSAV VDGTNININI  300
NSSFVDGMEV EVKIIGVEAM IRVRSPNVNY PCARLMNVLR ELEFQIHHAT VSSMKEMMQQ  360
DVVIRVPHNV TNEEAIKSVI LTKLSFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-23215264857Transcription factor MYC2
5gnj_B2e-23215264857Transcription factor MYC2
5gnj_E2e-23215264857Transcription factor MYC2
5gnj_F2e-23215264857Transcription factor MYC2
5gnj_G2e-23215264857Transcription factor MYC2
5gnj_I2e-23215264857Transcription factor MYC2
5gnj_M2e-23215264857Transcription factor MYC2
5gnj_N2e-23215264857Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g083170.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092610.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0005L01, complete sequence
GenBankAP0092800.0Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0201M14, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246085.20.0transcription factor bHLH14-like
TrEMBLA0A3Q7HUW30.0A0A3Q7HUW3_SOLLC; Uncharacterized protein
STRINGSolyc08g083170.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10722185
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-61bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]