PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g077000.1.1
Common NameLOC101259870
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 279aa    MW: 31080.8 Da    PI: 6.3359
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g077000.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001481103123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         y+C+ C + F++   L  H+++H
  Solyc08g077000.1.1  81 YTCTFCRREFRSAQALGGHMNVH 103
                         9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-678108No hitNo description
PfamPF139122.2E-581104IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.15781108IPR007087Zinc finger, C2H2
SMARTSM003550.006681103IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAAELGILSS TQLQKLAQSQ EQHSQQQLSS LQPPFNPDSV TDCWMWNAKQ ATQDDDDSWE  60
VRAFEEDTGN AMGTTWPPRS YTCTFCRREF RSAQALGGHM NVHRRDRARL HQAPPQYASN  120
SIHNHNHNHI SSQNSNSTFL VPTQEFVTNG GLCLLYSLPN PSNTHIFNNP TSRKSCTMNN  180
NSSSSSTLNL SISPYPTNNN LMSPTTPYPT PTSLNFPINK PNPRICNTSN DDDNNNNNHD  240
YGSNKRDSLI EDELDLELRL GWRSSSSTTT TTTTTSSP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-1376103229superman protein
2l1o_A3e-1376103229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g077000.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004246181.10.0zinc finger protein 10-like
TrEMBLA0A3Q7IN290.0A0A3Q7IN29_SOLLC; Uncharacterized protein
STRINGSolyc08g077000.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59532133
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.16e-35C2H2 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]