PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g006490.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 277aa    MW: 32330.2 Da    PI: 10.0859
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g006490.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B341.23e-131495599
                        -..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                  B3  5 ltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
                              +k+g l +p  f+ ++ +g+   +++  +  + g +W++k+  ++++    +++GW eFv+++gLk g +++F+++g++ef   +++
  Solyc08g006490.1.1 14 I--QPGFKNG-LKIPIGFL-KYlKGN--DNVEHAILKRGGYKWSMKV--NGHR----FEAGWVEFVEQHGLKLGNILMFRHEGNMEF--EFSI 92
                        4..4556665.********.555666..567889999**********..7777....9************************99999..8888 PP

                        E-S CS
                  B3 97 frk 99
                        f++
  Solyc08g006490.1.1 93 FDS 95
                        876 PP
2B349.11e-15163244588
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                         ++++++ ++g l lp++fa ++g+ + ++ +l+++de+ rsW+vkl+ + k ++y+ + G  +F  +n L+ gD ++F+++ + 
  Solyc08g006490.1.1 163 TIREYNISRGYLHLPRQFAYANGLAN-KKCDLIIRDERQRSWNVKLS-SSKTRSYISGCGRTKFFADNCLNKGDCIMFEVVTNG 244
                         5678999***************8775.4459***************4.444457999**********************87643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-19398IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-195102IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.829796IPR003340B3 DNA binding domain
CDDcd100178.69E-13894No hitNo description
SMARTSM010192.4E-141096IPR003340B3 DNA binding domain
PfamPF023622.7E-101895IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-16157252IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-14158257IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.08159254IPR003340B3 DNA binding domain
SMARTSM010191.8E-8159254IPR003340B3 DNA binding domain
PfamPF023622.7E-13164246IPR003340B3 DNA binding domain
CDDcd100171.94E-9169239No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKIPPKKPHF FKPIQPGFKN GLKIPIGFLK YLKGNDNVEH AILKRGGYKW SMKVNGHRFE  60
AGWVEFVEQH GLKLGNILMF RHEGNMEFEF SIFDSSHCDR EYVEYMEEVG DHTREEISKK  120
FKFKEDATER PRQKIKSSRK TSSHIIKVAN HHKSFGHSHV ECTIREYNIS RGYLHLPRQF  180
AYANGLANKK CDLIIRDERQ RSWNVKLSSS KTRSYISGCG RTKFFADNCL NKGDCIMFEV  240
VTNGETPIWK FQVTYREVPL QMFQGKFSHV TNLLFL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g006490.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092831e-19Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070638.10.0B3 domain-containing protein REM9-like
TrEMBLA0A3Q7HHD90.0A0A3Q7HHD9_SOLLC; Uncharacterized protein
STRINGSolyc08g006490.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Representative plantOGRP2682231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.14e-29B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]