PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc08g006270.1.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 196aa    MW: 22405.8 Da    PI: 8.8547
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc08g006270.1.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.64.6e-1850134593
                         -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         +++++  ++g l+lpk+f  ++g+++++   l+++de+ rsW+++l y+ +s  ++l+ GW+eF+ an+LkegD ++F+++  +++++ 
  Solyc08g006270.1.1  50 FLRPYCISKGYLRLPKQFSMANGLINKK-CGLIIRDERERSWNLRL-YTHNSIVHILG-GWSEFCVANDLKEGDYMMFEVVV-NGEKPI 134
                         567899999**********9**777544.47999************.89999999999.********************765.444455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-1844137IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.04E-1945137IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.87246140IPR003340B3 DNA binding domain
SMARTSM010199.8E-1747141IPR003340B3 DNA binding domain
PfamPF023622.5E-1650137IPR003340B3 DNA binding domain
CDDcd100171.10E-1550125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MFEVVTNGKQ PVWKIHHLTN PSTVEEPSEN SVFKETAPHN PIGQSHFECF LRPYCISKGY  60
LRLPKQFSMA NGLINKKCGL IIRDERERSW NLRLYTHNSI VHILGGWSEF CVANDLKEGD  120
YMMFEVVVNG EKPIWKFHNK PTPSIKSSRN VEAANHKPAD HSRFVCTIKP YCLTYGYLCL  180
PKQFVDGISS VRHIA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc08g006270.1.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0092831e-128Solanum lycopersicum genomic DNA, chromosome 8, clone: C08HBa0216M19, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070916.11e-134B3 domain-containing protein REM17 isoform X4
TrEMBLA0A3Q7HH761e-127A0A3Q7HH76_SOLLC; Uncharacterized protein
STRINGSolyc08g006270.1.11e-146(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Representative plantOGRP2682231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31615.11e-17B3 family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]