PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g052930.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 436aa    MW: 49345.3 Da    PI: 6.7503
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g052930.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.91.5e-072913311055
                         HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r RR+++ +++  L +llP++     kK++ +++Le+A +Y+k Lq
  Solyc07g052930.2.1 291 RLRRQKLSEKIRCLEKLLPWD-----KKMDTSTMLEEAYKYVKFLQ 331
                         88******************9.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.474281330IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.1E-5287336IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-10288342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.01E-5291334No hitNo description
Gene3DG3DSA:4.10.280.107.3E-9291338IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-5291331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MGKEKLVNEF LIFILDVNGL SRYSVLVNDN GKVLQRYPYL PNQEELVSDE VLSMLRAGTY  60
ISTVGSKSNQ RISLVFFCVF CVRAMERKLP LVQPEFNAGE ALLLPLMESD EAFINGMYNG  120
LSYQSLLSLN LDHSYYGEVK PFSANSSNFR PSFTNDMLCA GTTASSQIQQ SSGTFHEFST  180
GDFAWLDKKT EINPDADQKL KYPKLEPVTD NLQLYPYNNE VLLCEPFNFF SNGVGYPSLP  240
DLRCMEQPNY LDFSSSLVTT ENRVVEPVRP VSEVMSNLLK NRQPYSSSTT RLRRQKLSEK  300
IRCLEKLLPW DKKMDTSTML EEAYKYVKFL QAQIDVLQSM PPLVEGGASS DQDRNGKSTS  360
YGLNHEAKAI SVFGTLARLN RQQLLQVLLN SPVAQTYLYS KGCCVYSVEQ LVQYRTIAQR  420
NAFYRRSLFL SGMLS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.15194e-38flower| fruit| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g052930.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2535910.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone hba-13d24 map 7, complete sequence
GenBankAC2536110.0Solanum lycopersicum strain Heinz 1706 chromosome 7 clone slm-111k20 map 7, complete sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019070343.10.0transcription factor bHLH66
TrEMBLA0A3Q7HC050.0A0A3Q7HC05_SOLLC; Uncharacterized protein
STRINGSolyc07g052930.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112501821
Representative plantOGRP1126656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.17e-17bHLH family protein
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]