PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc07g016180.2.1
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family ARF
Protein Properties Length: 1113aa    MW: 123332 Da    PI: 6.6278
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc07g016180.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B368.96.7e-22135236199
                         EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                         f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  Solyc07g016180.2.1 135 FCKTLTASDTSTHGGFSVPRRSAEKIfppldySMQPPA-QELVARDLHDNLWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 222
                         99*****************************9545444.38************************************************.. PP

                         SSSEE..EEEEE-S CS
                  B3  86 grsefelvvkvfrk 99 
                         ++++++l+++++r+
  Solyc07g016180.2.1 223 RDEKQQLLLGIRRA 236
                         5688889****997 PP
2Auxin_resp119.52.6e-39261344183
          Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                         aahaa+++s+F+v+YnPras+seFv++++k+ ka++ ++vs+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  Solyc07g016180.2.1 261 AAHAAANNSPFTVFYNPRASPSEFVIPLAKYYKATYsSQVSLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 344
                         79*******************************99879********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-43125264IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-41126250IPR015300DNA-binding pseudobarrel domain
CDDcd100171.51E-18134226No hitNo description
PROSITE profilePS5086311.829135237IPR003340B3 DNA binding domain
PfamPF023621.4E-19135236IPR003340B3 DNA binding domain
SMARTSM010196.8E-22135237IPR003340B3 DNA binding domain
PfamPF065071.4E-34261344IPR010525Auxin response factor
PROSITE profilePS5174528.36610011085IPR000270PB1 domain
PfamPF023099.2E-710021086IPR033389AUX/IAA domain
SuperFamilySSF542771.18E-610171079No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1113 aa     Download sequence    Send to blast
MKTPVNTAGV QQQHTVNGNP GEVEKKSINP ELWQACAGPL VNLPAAGTHV VYFPQGHSEQ  60
VAASMKKDVD AQIPNYPNLP SKLVCLLHNI TLHADPETDE VYAQMTLQPV PSFDKEALLR  120
SDLSMKANKP QTEFFCKTLT ASDTSTHGGF SVPRRSAEKI FPPLDYSMQP PAQELVARDL  180
HDNLWTFRHI YRGQPKRHLL TTGWSLFVSG KRLFAGDSVL FIRDEKQQLL LGIRRANRQP  240
TNLSSSVLSS DSMHIGILAA AAHAAANNSP FTVFYNPRAS PSEFVIPLAK YYKATYSSQV  300
SLGMRFRMMF ETEESGTRRY MGTITGISDL DPVRWKNSQW RNLQVGWDES TAGERRNRVS  360
IWEIEPVTAP FFICPTPPFF RSKRPRLPGM PDDDCSDLDG LFKRTMPWLG DDFGMKDPQG  420
LPGLSLVQWM NMQQNPSLAN SMQPNYLHSL SGSVLQNVGG GADLSRQLCL PAPQLPQQNT  480
LQFGSQRPTQ QVQQLDQLQK IPTTTLSPAG SIMQPQQQLS DISQQPRQNL INQSVPTNHV  540
QAQLLQAQSL VQSQNVLQQQ QSFQNQLQRN LPQNLPQQQQ IMNQTQQQSF MQPQPSDPLN  600
QQLHFSDNQL QMQLLQKLQQ QSLLAQQSLL QQPSQLMPIQ DQQKHLDVSQ NFSRSLATSQ  660
MLDMSQTTSN STSLSQPQVA QQQMTINNSQ SNLRFAQPNQ HMKQQQQQQQ PGILPEIPGQ  720
VGQILPPTTN QLSANCSSFL TGAVGGGQSV VTDDIPSCST SPSTNNCQNV VQPIMNGRIH  780
RGTAAAEETT QSSLPLLSSS GLEAMSPNRN LVKDLQQKPD VKPSMNISKS QNHGFSTPQT  840
YLNNAVPQMD YLDSSSSATS VYFSQNDVQL QQTTNPMSFS SQAIVFRDSQ DGEVQGDPRH  900
SVAFGANMDN QLGISMMPDS LITNSLVGSR KDVSNNISSG GGMLSSYENP KDAQPELSSS  960
MVSQSFGVPD MAFNSIDSTI NEGSFMNRGA WAPPPQMPRM RTFTKVHKRG AVGRSIDIAR  1020
YSGYEELKQD LARRFGIEGQ LEDRQRIGWK LVYVDHENDV LLVGDDPWEE FVNCVRCIKI  1080
LSPQEVQQIS LDGDFGNNVQ NQACSSSDGG NV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1692436547388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.100650.0fruit| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc07g016180.2.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM1305440.0Solanum lycopersicum auxin response factor 19 (ARF19) mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234740.20.0auxin response factor 19
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A3Q7I2480.0A0A3Q7I248_SOLLC; Auxin response factor
STRINGSolyc07g016180.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Representative plantOGRP41931125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]
  2. Wu J, et al.
    Identification, isolation and expression analysis of auxin response factor (ARF) genes in Solanum lycopersicum.
    Plant Cell Rep., 2011. 30(11): p. 2059-73
    [PMID:21735233]