PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Solyc07g008180.2.1

Common Name

LOC101247536

Organism

Solanum lycopersicum

Taxonomic ID

4081

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

YABBY

Protein Properties

Length: 181aa MW: 20341.2 Da PI: 8.4989

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Solyc07g008180.2.1	genome	ITAG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	218.9	1.5e-67	6	163	4	170
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 + +s+q+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q ++ s ++++ + + e +++ + ++ ++++ s + Solyc07g008180.2.1 6 DVASDQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAAFQSSSSASWQNHQVPNYTAPEYRMDFGSSTKCNMNRMSMR- 95 5689*****************************************9999998888875555555555555554443333333333222. PP YABBY 95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 + +++v + v+rPPekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Solyc07g008180.2.1 96 --------TPITNNVHEERIVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 163 ........23333333344589**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.9E-71	8	163	IPR006780	YABBY protein
SuperFamily	SSF47095	5.24E-8	108	156	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.3E-4	111	157	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MASCIDVASD QLCYIPCNFC NIVLAVSVPC SSLFDIVTVR CGHCTNLWSV NMAAAFQSSS 60 SASWQNHQVP NYTAPEYRMD FGSSTKCNMN RMSMRTPITN NVHEERIVNR PPEKRQRVPS 120 AYNQFIKEEI QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNNQ AKLACGSRKL 180 *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Les.10352	0.0	flower\| fruit\| leaf

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Solyc07g008180.2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC232631	2e-69	Solanum lycopersicum chromosome 7 clone C07SLe0071O22, complete sequence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001353827.1	1e-134	axial regulator YABBY5a isoform 2
Swissprot	Q8GW46	4e-87	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	A0A068FJR2	1e-127	A0A068FJR2_9SOLN; YAB5 protein
STRING	Solyc07g008180.2.1	1e-133	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163
Representative plant	OGRP2210	12	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	1e-84	YABBY family protein

Link Out ? help Back to Top
Phytozome	Solyc07g008180.2.1
Entrez Gene	101247536

Publications ? help Back to Top
Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments. Theor. Appl. Genet., 2005. 112(1): p. 72-84 [PMID:16208505] Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]