PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc06g068460.2.1
Common NameLOC100301944
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family WRKY
Protein Properties Length: 361aa    MW: 39744.3 Da    PI: 8.2726
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc06g068460.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.7e-30168227159
                         ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                         ++Dgy+WrKYGqK+ +++++pr+Y+rC++a gCpvkkkv+rs ed+++v+ tYegeHnh+
  Solyc06g068460.2.1 168 VKDGYQWRKYGQKVTRDNPCPRAYFRCSFApGCPVKKKVQRSIEDQSIVVATYEGEHNHP 227
                         58***************************99****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29160228IPR003657WRKY domain
PROSITE profilePS5081126.418163229IPR003657WRKY domain
SuperFamilySSF1182906.28E-26165228IPR003657WRKY domain
SMARTSM007745.5E-36168228IPR003657WRKY domain
PfamPF031064.9E-25169227IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0009611Biological Processresponse to wounding
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050691Biological Processregulation of defense response to virus by host
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEFTSLVDTS LDLSFRPRQK VLKQEVQSDF TGLSIERENM VVKNEAGDLL EELNRVSSEN  60
KKLTEMLTVV CENYNALRNQ MMEYMSTQNG VAEDTSAGSR KRKAESISNP VNNNNNNNNN  120
MDVVHGRSSE SSSSDEESCC KKLREEHIKA KVTIVSMKTD ASDTSLIVKD GYQWRKYGQK  180
VTRDNPCPRA YFRCSFAPGC PVKKKVQRSI EDQSIVVATY EGEHNHPQTS KPESGPSTNT  240
STASRLNVTT IAGTTTSVPC STTLNSSGPT ITLDLTAPKT VEKRDMKMNH STTSPTSGNS  300
IRTTTTTSAA GGEYQNRPEF QQFLIEQMAT SLTKDPSFKA ALAAAISGKI LQHNNQTGRW  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-201672261371WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.109050.0callus| flower| fruit| leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00251DAPTransfer from AT1G80840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc06g068460.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6542650.0Solanum lycopersicum WRKY transcription factor 1 mRNA, complete cds
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001234301.20.0WRKY transcription factor 40
TrEMBLA0A3Q7H0070.0A0A3Q7H007_SOLLC; Uncharacterized protein
STRINGSolyc06g068460.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28552450
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.15e-87WRKY DNA-binding protein 40
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]