PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Solyc06g048870.1.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | WRKY | ||||||||
Protein Properties | Length: 244aa MW: 26854.2 Da PI: 6.621 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 69.7 | 4.2e-22 | 46 | 101 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 +Dgy+WrKYGqKe+ gs+fpr Ct++ +Cp+kk+v+r ++dp v+e+tY+++H++ Solyc06g048870.1.1 46 EDGYTWRKYGQKEILGSRFPR----CTHQklyHCPAKKQVQRLDNDPYVFEVTYRSQHTC 101 7*******************6....99998999*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.4E-21 | 44 | 102 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.31E-19 | 44 | 103 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-29 | 45 | 103 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 15.216 | 46 | 99 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.5E-19 | 46 | 101 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MFCSDDILIA VSFAHFFSFV CRTGDRDRRT LRVGAPRMGN LELPPEDGYT WRKYGQKEIL 60 GSRFPRCTHQ KLYHCPAKKQ VQRLDNDPYV FEVTYRSQHT CYMSATAPTV PPPSAEEMTH 120 KTTTTLPPAP LLLPPPTSAS LSGHWLSMDI KPQGDQAGTS YTTTPFDIQR DFGHGSVGSL 180 ASLVTAGVGD VGPSGGRYGR EIDYQPVVDM ADAMFNSGSS SNTSMDKIFS SIDDKWDTAE 240 KKE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 6e-15 | 46 | 101 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Solyc06g048870.1.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU914528 | 4e-62 | S.lycopersicum DNA sequence from clone LE_HBa-27B24 on chromosome 4, complete sequence |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004241091.1 | 1e-150 | WRKY transcription factor 55 | ||||
TrEMBL | M1AGZ7 | 1e-142 | M1AGZ7_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g048870.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9280 | 18 | 24 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 2e-36 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Solyc06g048870.1.1 |
Publications ? help Back to Top | |||
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