PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc05g006650.2.1
Common NameLOC101248972
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bHLH
Protein Properties Length: 273aa    MW: 29727.9 Da    PI: 6.3725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc05g006650.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.41.7e-10156203455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++++P +    +k   Ka +L + ++YI+sLq
  Solyc05g006650.2.1 156 SHSLAERARREKISERMKVLQDIVPGC----NKVIGKALVLDEIINYIQSLQ 203
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.60E-10150207No hitNo description
SuperFamilySSF474591.31E-17150220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.593152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-18152223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-8156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDPQASMMNH AGGFQSPPFN LSEIWQFPIN AGEGETPYSF PLSTAAAPQN VSDDVRNNDP  60
MVLDRRTNNY SGGGGGGAAR KRNEDDESAK GVSTSGNGLT ESASKRMKVT RSNENCEARG  120
DGEGNSVKSA EQPAKPAEPP KDYIHVRARR GQATDSHSLA ERARREKISE RMKVLQDIVP  180
GCNKVIGKAL VLDEIINYIQ SLQHQVEFLS MKLEAVNSKM PSIEGYPSKD FGQQPFDTNA  240
MAFSSQATRE YTRGTSPDWL HMQLGGGFER TT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Les.17080.0floral bud| flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc05g006650.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0139790.0Lycopersicon esculentum clone 133024F, mRNA sequence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004238742.10.0transcription factor BHLH094
SwissprotQ69WS32e-77BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A3Q7H5D00.0A0A3Q7H5D0_SOLLC; Uncharacterized protein
STRINGSolyc05g006650.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12872471
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-90BIG PETAL P
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]