PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Solyc04g079940.2.1
Common NameLOC101250112
Organism
Solanum lycopersicum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 391aa    MW: 43504.4 Da    PI: 5.1037
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Solyc04g079940.2.1genomeITAGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM255.2e-083711829128
                 NAM  29 eleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgekt 119
                         +    + e++ y+++P++Lp       +  +f +++ +        +++t+ g W+ + +  e+++ ++   g ++t  f++ +a+  +kt
  Solyc04g079940.2.1  37 PD--DLIEFNPYQYDPSNLP-------DGAWFLVRKTE--------EKSTEYGLWRVKDSACEIFA-NSDISGWRTTYEFFQVQASIEQKT 109
                         33..4567788889999998.......22344444433........356899**************.9999******************** PP

                 NAM 120 dWvmheyrl 128
                           +mhey++
  Solyc04g079940.2.1 110 VYIMHEYKV 118
                         *******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512575117No hitNo description
PROSITE profilePS5100514.7179140IPR003441NAC domain
SuperFamilySSF1019411.19E-1019137IPR003441NAC domain
PfamPF023651.3E-434117IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MRPLSPSASP PGLMSSCGTD GEIFLVLHQI NRGSPIPDDL IEFNPYQYDP SNLPDGAWFL  60
VRKTEEKSTE YGLWRVKDSA CEIFANSDIS GWRTTYEFFQ VQASIEQKTV YIMHEYKVTP  120
KGQRVLTKSQ ESSICRFFGL WNDAEHDDVR HLLSYFSFIP SVNPDTSGND GQRSIAEPQV  180
NGQIEGAGSS LVDKWIDQSE IDCIMRGDYL ELNDLIDGAS HDSSSSENTS RQSFVSDDFF  240
NSRALLAELD DEKKEDLSGK GSLLAELNDE KKEDLSGKGS TSNHHTIMMC QIANDVVVQP  300
GPLGFVFIGN DAKAKETQQT PDNHKSKSQD QAVKKMKVAK KLKDEGPSHA RRATTSSSSS  360
NSSSDEPGRA ARREEKRSKK LMKFLCFMPF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSolyc04g079940.2.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886648.10.0uncharacterized protein LOC101250112
TrEMBLA0A3Q7G7680.0A0A3Q7G768_SOLLC; Uncharacterized protein
STRINGSolyc04g079940.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112072123
Representative plantOGRP1216455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24430.24e-07NAC domain containing protein 38
Publications ? help Back to Top
  1. Wang Y,van der Hoeven RS,Nielsen R,Mueller LA,Tanksley SD
    Characteristics of the tomato nuclear genome as determined by sequencing undermethylated EcoRI digested fragments.
    Theor. Appl. Genet., 2005. 112(1): p. 72-84
    [PMID:16208505]